Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C3Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 24


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 -4.379 1.679 0.722
2 CA C CA N N N 0 -4.528 2.403 -0.516
3 C C C N N N 0 -5.829 2.058 -1.222
4 O O O N N N 0 -6.601 1.187 -0.839
5 CB C CB N N N 0 -3.309 2.236 -1.427
6 SG S SG N N N 0 -3.097 0.552 -2.062
7 C1 C C1 N N N 0 -0.412 1.221 -2.194
8 O2 O O2 N N N 0 -1.776 1.741 -4.096
9 N1 N N1 N N N 0 -1.248 -0.558 -3.671
10 O3 O O3 N N N 0 -0.213 -0.336 -4.664
11 C2 C C2 N N N 0 -1.566 0.753 -3.087
12 OXT O OXT N N Y 0 -6.048 2.801 -2.333
13 HN1 H 1HN N N N 0 -5.191 1.518 1.294
14 HN2 H 2HN N N N 0 -3.455 1.529 1.091
15 HA H HA N N N 0 -4.61 3.457 -0.225
16 HBC1 H 1HBC N N N 0 -2.397 2.494 -0.878
17 HBC2 H 2HBC N N N 0 -3.38 2.909 -2.288
18 HOT H HOT N N N 0 -6.887 2.555 -2.778
19 H1C1 H 1H1C N N N 0 -0.602 2.214 -1.773
20 H1C2 H 2H1C N N N 0 0.513 1.333 -2.773
21 H1C3 H 3H1C N N N 0 -0.212 0.523 -1.374
22 H1 H H1 N N N 0 -2.022 -0.858 -4.262
23 H3 H H3 N N N 0 0.422 -1.019 -4.388
24 H5 H H5 N N N 0 -2.532 1.438 -4.626