Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C45

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.992 -0.744 1.792
2 C2 C C2 N N N 0 -0.239 0.347 2.015
3 N3 N N3 N N N 0 0.409 0.512 3.167
4 C4 C C4 N N N 0 0.329 -0.401 4.126
5 C5 C C5 N N N 0 -0.447 -1.559 3.922
6 C6 C C6 N N N 0 -1.106 -1.709 2.748
7 O2 O O2 N N N 0 -0.149 1.201 1.149
8 N4 N N4 N N N 0 1.004 -0.22 5.311
9 C1' C C1* R N N 0 -1.695 -0.897 0.516
10 C2' C C2* N N N 0 -2.67 0.277 0.311
11 CM2 C CM2 N N N 0 2.355 0.839 6.817
12 C3' C C3* S N N 0 -2.207 0.928 -1.014
13 C4' C C4* R N N 0 -1.411 -0.222 -1.68
14 O4' O O4* N N N 0 -0.751 -0.867 -0.567
15 O3' O O3* N N N 0 -3.328 1.305 -1.817
16 C5' C C5* N N N 0 -0.386 0.334 -2.67
17 O5' O O5* N N N 0 0.332 -0.745 -3.269
18 P P P N N N 0 1.388 -0.091 -4.294
19 O1P O O1P N N N 0 2.237 -1.257 -5.008
20 O2P O O2P N N N 0 0.596 0.756 -5.41
21 O O O N N N 0 1.788 0.941 5.509
22 O3P O O3P N N Y 0 2.305 0.803 -3.553
23 H5 H H5 N N N 0 -0.523 -2.312 4.693
24 H6 H H6 N N N 0 -1.71 -2.586 2.569
25 H4 H H4 N N N 0 0.944 -0.89 6.01
26 H1' H H1* N N N 0 -2.242 -1.839 0.505
27 H2'1 H 1H2* N N N 0 -3.693 -0.087 0.22
28 H2'2 H 2H2* N N N 0 -2.59 0.988 1.133
29 HM21 H 1HM2 N N N 0 2.97 1.716 7.016
30 HM22 H 2HM2 N N N 0 1.556 0.78 7.556
31 HM23 H 3HM2 N N N 0 2.972 -0.057 6.876
32 H3' H H3* N N N 0 -1.563 1.786 -0.822
33 H4' H H4* N N N 0 -2.086 -0.917 -2.179
34 HA H HA N N N 0 -3.831 1.955 -1.307
35 H5'1 H 1H5* N N N 0 -0.9 0.901 -3.446
36 H5'2 H 2H5* N N N 0 0.31 0.986 -2.144
37 H1P H H1P N N N 0 2.855 -0.823 -5.612
38 H2P H H2P N N N 0 0.011 0.138 -5.869