Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C6P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 4.11 -1.644 -0.915
2 C C C N N N 0 1.981 -2.028 -2.073
3 O O O N N N 0 1.226 -2.527 -1.247
4 P P P N N N 0 -0.133 0.705 1.385
5 OP3 O OP3 N N N 0 -0.354 0.103 2.869
6 OP1 O OP1 N N N 0 -0.263 -0.596 0.433
7 OP2 O OP2 N N N 0 -1.029 1.851 1.017
8 OP4 O OP4 N N N 0 1.45 1.028 1.332
9 C5M C C5M N N N 0 2.362 -0.011 1.667
10 C5 C C5 N Y N 0 3.757 0.497 1.553
11 C6 C C6 N Y N 0 4.376 1.078 2.649
12 N1 N N1 N Y N 0 5.637 1.565 2.636
13 C2 C C2 N Y N 0 6.307 1.464 1.466
14 C2A C C2A N N N 0 7.699 2.006 1.464
15 C3 C C3 N Y N 0 5.779 0.902 0.315
16 O3 O O3 N N N 0 6.508 0.832 -0.83
17 C4 C C4 N Y N 0 4.482 0.414 0.374
18 C4A C C4A N N N 0 3.863 -0.205 -0.846
19 CA C CA S N N 0 3.487 -2.232 -2.074
20 OXT O OXT N N N 0 1.546 -1.246 -3.09
21 CB C CB N N N 0 3.874 -3.703 -2.248
22 SG S SG N N N 0 3.283 -4.439 -3.809
23 HN H HN N N N 0 5.123 -1.799 -0.945
24 HOP3 H HOP3 N N N 0 -1.265 -0.11 3.164
25 HOP1 H HOP1 N N N 0 -1.156 -0.942 0.222
26 H5M1 H 1H5M N N N 0 2.187 -0.861 0.993
27 H5M2 H 2H5M N N N 0 2.145 -0.353 2.689
28 H6 H H6 N N N 0 3.863 1.173 3.601
29 H2A1 H 1H2A N N N 0 7.877 2.601 2.368
30 H2A2 H 2H2A N N N 0 8.439 1.198 1.426
31 H2A3 H 3H2A N N N 0 7.875 2.642 0.587
32 HO3 H HO3 N N N 0 7.355 0.386 -0.665
33 H4A1 H 1H4A N N N 0 2.779 -0.048 -0.851
34 H4A2 H 2H4A N N N 0 4.261 0.247 -1.761
35 HA H HA N N N 0 3.87 -1.662 -2.928
36 HOXT H HOXT N N N 0 0.571 -1.136 -3.078
37 HB1 H 1HB N N N 0 3.456 -4.298 -1.429
38 HB2 H 2HB N N N 0 4.963 -3.818 -2.219
39 HSG H HSG N N N 0 2.843 -3.291 -4.339