Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CFZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 4.176 1.031 0.067
2 N1 N N1 N N N 0 -2.467 0.031 0.464
3 C2 C C2 N N N 0 -2.544 0.708 -0.696
4 O2 O O2 N N N 0 -1.667 0.569 -1.532
5 N3 N N3 N N N 0 -3.563 1.528 -0.946
6 C4 C C4 N N N 0 -4.53 1.699 -0.054
7 N4 N N4 N N N 0 -5.578 2.548 -0.324
8 C5 C C5 N N N 0 -4.478 1.004 1.171
9 C6 C C6 N N N 0 -3.439 0.169 1.408
10 C1' C C1' R N N 0 -1.334 -0.865 0.71
11 O1P O O1P N N N 0 4.62 2.004 1.27
12 C2' C C2' R N N 0 -1.311 -2.003 -0.334
13 F2' F F2' N N N 0 -1.886 -3.164 0.194
14 O2P O O2P N N N 0 3.925 1.834 -1.15
15 C3' C C3' R N N 0 0.192 -2.224 -0.616
16 O3' O O3' N N N 0 0.579 -3.553 -0.259
17 O3P O O3P N N Y 0 5.349 -0.033 -0.224
18 C4' C C4' R N N 0 0.9 -1.193 0.291
19 O4' O O4' N N N 0 -0.086 -0.162 0.517
20 C5' C C5' N N N 0 2.126 -0.614 -0.417
21 O5' O O5' N N N 0 2.831 0.248 0.479
22 HN4 H HN4 N N N 0 -5.612 3.025 -1.168
23 HN4A H HN4A N N N 0 -6.284 2.671 0.33
24 H5 H H5 N N N 0 -5.258 1.132 1.908
25 H6 H H6 N N N 0 -3.377 -0.375 2.339
26 H1' H H1' N N N 0 -1.387 -1.274 1.719
27 HO1P H HO1P N N N 0 5.425 2.509 1.091
28 H2' H H2' N N N 0 -1.831 -1.699 -1.242
29 H3' H H3' N N N 0 0.417 -2.03 -1.665
30 HO3' H HO3' N N Y 0 0.119 -4.243 -0.757
31 HO3P H HO3P N N Y 0 5.566 -0.595 0.533
32 H4' H H4' N N N 0 1.19 -1.654 1.235
33 H5' H H5' N N N 0 2.782 -1.426 -0.731
34 H5'A H H5'A N N N 0 1.807 -0.046 -1.291