Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CIB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 64


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.24 0.752 -4.048
2 CA1 C CA1 S N N 0 -0.158 -0.344 -3.081
3 C1 C C1 N N N 0 -0.283 0.206 -1.684
4 O1 O O1 N N N 0 0.107 1.328 -1.437
5 CB1 C CB1 N N N 0 1.188 -1.056 -3.23
6 CG1 C CG1 N N N 0 1.315 -1.615 -4.648
7 CD1 C CD1 N N N 0 2.661 -2.326 -4.797
8 CD2 C CD2 N N N 0 0.181 -2.609 -4.908
9 C10 C C10 N N N 0 0.662 1.753 -4.01
10 C25 C C25 N N N 0 0.578 2.881 -5.005
11 O28 O O28 N N N 0 1.542 1.744 -3.176
12 N2 N N2 N N N 0 -0.828 -0.546 -0.708
13 CA2 C CA2 S N N 0 -0.995 0.006 0.637
14 C2 C C2 N N N 0 -0.193 -0.808 1.618
15 O2 O O2 N N N 0 0.454 -1.758 1.231
16 CB2 C CB2 N N N 0 -2.474 -0.037 1.027
17 CG2 C CG2 N N N 0 -3.27 0.895 0.112
18 CD3 C CD3 N N N 0 -4.76 0.787 0.446
19 CD4 C CD4 N N N 0 -2.804 2.336 0.324
20 N3 N N3 N N N 0 -0.195 -0.482 2.926
21 CA3 C CA3 S N N 0 0.585 -1.274 3.88
22 C3 C C3 N N N 0 -0.266 -2.395 4.417
23 O3 O O3 N N N 0 -1.407 -2.519 4.042
24 CB3 C CB3 N N N 0 1.038 -0.38 5.035
25 CG3 C CG3 N N N 0 1.903 0.758 4.49
26 CE3 C CE3 N N N 0 3.222 2.79 5.099
27 C19 C C19 N N N 0 2.357 1.652 5.645
28 HN1 H HN1 N N N 0 -0.944 0.759 -4.715
29 HA1 H HA1 N N N 0 -0.965 -1.052 -3.266
30 HB11 H 1HB1 N N N 0 1.995 -0.347 -3.045
31 HB12 H 2HB1 N N N 0 1.249 -1.872 -2.51
32 HG1 H HG1 N N N 0 1.254 -0.798 -5.368
33 HD11 H 1HD1 N N N 0 2.751 -2.725 -5.808
34 HD12 H 2HD1 N N N 0 3.469 -1.618 -4.612
35 HD13 H 3HD1 N N N 0 2.722 -3.143 -4.078
36 HD21 H 1HD2 N N N 0 0.242 -3.426 -4.188
37 HD22 H 2HD2 N N N 0 -0.777 -2.102 -4.801
38 HD23 H 3HD2 N N N 0 0.271 -3.008 -5.918
39 H251 H 1H25 N N N 0 1.385 3.59 -4.82
40 H252 H 2H25 N N N 0 0.668 2.483 -6.015
41 H253 H 3H25 N N N 0 -0.381 3.388 -4.899
42 HN2 H HN2 N N N 0 -1.11 -1.455 -0.898
43 HA2 H HA2 N N N 0 -0.646 1.039 0.651
44 HB21 H 1HB2 N N N 0 -2.847 -1.056 0.921
45 HB22 H 2HB2 N N N 0 -2.587 0.284 2.062
46 HG2 H HG2 N N N 0 -3.109 0.609 -0.926
47 HD31 H 1HD3 N N N 0 -5.327 1.451 -0.205
48 HD32 H 2HD3 N N N 0 -5.092 -0.24 0.295
49 HD33 H 3HD3 N N N 0 -4.921 1.072 1.485
50 HD41 H 1HD4 N N N 0 -2.859 2.584 1.384
51 HD42 H 2HD4 N N N 0 -1.775 2.44 -0.02
52 HD43 H 3HD4 N N N 0 -3.446 3.013 -0.241
53 HN3 H HN3 N N N 0 -0.713 0.277 3.235
54 HA3 H HA3 N N N 0 1.458 -1.69 3.378
55 H3 H H3 N N N 0 0.143 -3.087 5.137
56 HB31 H 1HB3 N N N 0 1.619 -0.969 5.745
57 HB32 H 2HB3 N N N 0 0.165 0.036 5.537
58 HG31 H 1HG3 N N N 0 1.323 1.347 3.78
59 HG32 H 2HG3 N N N 0 2.777 0.342 3.987
60 HE31 H 1HE3 N N N 0 3.545 3.428 5.922
61 HE32 H 2HE3 N N N 0 4.095 2.374 4.597
62 HE33 H 3HE3 N N N 0 2.641 3.38 4.39
63 H191 H 1H19 N N N 0 2.937 1.063 6.355
64 H192 H 2H19 N N N 0 1.483 2.068 6.147