Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CX2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -3.499 1.0 -0.066
2 S S S N N N 0 -3.166 -4.167 0.46
3 N1 N N1 N N N 0 3.1 0.031 0.597
4 C2 C C2 N N N 0 3.001 -0.4 -0.674
5 O2 O O2 N N N 0 2.212 0.14 -1.431
6 N3 N N3 N N N 0 3.752 -1.406 -1.119
7 C4 C C4 N N N 0 4.619 -2.011 -0.317
8 N4 N N4 N N N 0 5.389 -3.049 -0.788
9 C5 C C5 N N N 0 4.746 -1.584 1.02
10 C6 C C6 N N N 0 3.976 -0.559 1.458
11 C1' C C1' R N N 0 2.266 1.144 1.056
12 C2' C C2' N N N 0 2.65 2.433 0.303
13 C3' C C3' S N N 0 1.338 2.873 -0.39
14 O3' O O3' N N N 0 1.169 4.29 -0.309
15 C4' C C4' R N N 0 0.264 2.14 0.453
16 N4' N N4' N N N 0 -3.433 -0.393 -1.008
17 O4' O O4' N N N 0 0.885 0.874 0.762
18 C5' C C5' N N N 0 -1.012 1.929 -0.365
19 O5' O O5' N N N 0 -2.023 1.357 0.468
20 C7' C C7' N N N 0 -2.925 -1.531 -0.231
21 C8' C C8' N N N 0 -3.794 -2.761 -0.5
22 OP1 O OP1 N N N 0 -4.015 2.123 -0.88
23 HS H HS N N N 0 -4.011 -5.16 0.13
24 HN4 H HN4 N N N 0 5.299 -3.34 -1.709
25 HN4A H HN4A N N N 0 6.022 -3.489 -0.199
26 H5 H H5 N N N 0 5.447 -2.066 1.686
27 H6 H H6 N N N 0 4.056 -0.213 2.478
28 H1' H H1' N N N 0 2.398 1.289 2.128
29 H2' H H2' N N N 0 2.988 3.197 1.002
30 H2'A H H2'A N N N 0 3.422 2.225 -0.439
31 H3' H H3' N N N 0 1.314 2.539 -1.427
32 HO3' H HO3' N N N 0 1.869 4.795 -0.746
33 H4' H H4' N N N 0 0.048 2.694 1.366
34 HN4' H HN4' N N N 0 -4.336 -0.602 -1.408
35 H5' H H5' N N N 0 -1.358 2.887 -0.752
36 H5'A H H5'A N N N 0 -0.803 1.255 -1.197
37 H7' H H7' N N N 0 -1.896 -1.741 -0.525
38 H7'A H H7'A N N N 0 -2.957 -1.289 0.831
39 H8' H H8' N N N 0 -3.761 -3.004 -1.562
40 H8'A H H8'A N N N 0 -4.822 -2.551 -0.206
41 OP3 O OP3 N N Y 0 -4.478 0.753 1.189
42 HOP3 H HOP3 N N Y 0 -4.201 0.03 1.768