Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CYU

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 151


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P1 P P1 N N N 0 -5.294 0.854 -0.262
2 O1 O O1 N N N 0 -7.011 -5.413 3.066
3 O2 O O2 N N N 0 -6.948 -4.095 -0.933
4 O3 O O3 N N N 0 -3.759 -4.731 0.106
5 O4 O O4 N N N 0 -4.826 -0.679 -0.055
6 O5 O O5 N N N 0 -4.375 1.377 -1.485
7 O6 O O6 N N N 0 -4.658 1.597 1.026
8 O7 O O7 N N N 0 -6.772 1.05 -0.44
9 O8 O O8 N N N 0 -1.963 -2.71 -0.483
10 O9 O O9 N N N 0 0.53 -3.202 0.78
11 O10 O O10 N N N 0 -0.658 -1.582 -2.139
12 O11 O O11 N Y N 0 -3.048 -2.629 -8.115
13 N1 N N1 N N N 0 -10.414 -12.897 4.161
14 N2 N N2 N Y N 0 -2.343 -3.8 -6.313
15 C1 C C1 N N N 0 -11.398 -12.601 3.622
16 C2 C C2 N N N 0 -12.606 -12.246 2.958
17 C3 C C3 N N N 0 -13.004 -10.984 2.709
18 C4 C C4 N N N 0 -12.279 -9.776 3.079
19 C5 C C5 N N N 0 -12.686 -8.522 2.826
20 C6 C C6 N N N 0 -11.904 -7.359 3.19
21 C7 C C7 N N N 0 -12.225 -6.067 2.979
22 C8 C C8 N N N 0 -11.306 -5.017 3.418
23 C9 C C9 N N N 0 -9.966 -5.089 3.307
24 C10 C C10 R N N 0 -8.937 -4.061 3.73
25 C11 C C11 R N N 0 -7.663 -4.161 2.847
26 C12 C C12 S N N 0 -7.904 -3.939 1.322
27 C13 C C13 S N N 0 -6.634 -4.17 0.456
28 C14 C C14 N N N 0 -5.492 -3.186 0.782
29 C15 C C15 S N N 0 -4.237 -3.404 -0.076
30 C16 C C16 R N N 0 -3.136 -2.427 0.305
31 C17 C C17 S N N 0 -3.447 -0.94 0.12
32 C18 C C18 N N N 0 -2.574 -0.522 -1.073
33 C19 C C19 R N N 0 -1.35 -1.463 -0.888
34 C20 C C20 N N N 0 -0.35 -1.017 0.207
35 C21 C C21 R N N 0 0.888 -1.921 0.263
36 C22 C C22 S N N 0 1.511 -2.109 -1.131
37 C23 C C23 S N N 0 0.412 -2.532 -2.128
38 C24 C C24 N N N 0 0.913 -2.673 -3.561
39 C26 C C26 N N N 0 -0.585 -2.313 -5.532
40 C25 C C25 N N N 0 -0.198 -3.064 -4.489
41 C27 C C27 N Y N 0 -1.658 -2.664 -6.478
42 C29 C C29 N Y N 0 -3.173 -3.733 -7.329
43 C28 C C28 N Y N 0 -2.034 -1.934 -7.528
44 C30 C C30 S N N 0 -4.215 -4.693 -7.727
45 C31 C C31 N N N 0 -4.85 -5.508 -6.55
46 C32 C C32 N N N 0 -5.579 -4.641 -5.522
47 C41 C C41 N N N 0 -3.704 -5.721 -8.771
48 C42 C C42 N N N 0 2.247 -0.834 -1.564
49 C43 C C43 N N N 0 -2.244 0.977 -1.035
50 C44 C C44 N N N 0 -3.285 -0.794 -2.422
51 C45 C C45 N N N 0 -2.62 -4.99 -0.703
52 C46 C C46 N N N 0 -8.487 -2.528 1.123
53 C47 C C47 N N N 0 -8.6 -4.301 5.209
54 C48 C C48 N N N 0 -11.972 -3.81 4.025
55 C49 C C49 N N N 0 -13.457 -5.553 2.282
56 C50 C C50 N N N 0 -14.271 -10.719 1.941
57 C33 C C33 N N N 0 -7.942 -4.393 -6.246
58 C34 C C34 S N N 0 -8.881 -3.427 -6.964
59 C35 C C35 S N N 0 -9.62 -2.508 -5.972
60 C36 C C36 S N N 0 -8.688 -1.689 -5.047
61 C37 C C37 N N N 0 -9.467 -0.851 -4.02
62 C38 C C38 N N N 0 -10.966 -0.891 -2.21
63 C39 C C39 N N N 0 -6.956 -0.027 -4.946
64 C40 C C40 N N N 0 -8.64 0.095 -6.655
65 N3 N N3 N N N 0 -6.65 -3.9 -6.142
66 N4 N N4 N N N 0 -7.829 -0.797 -5.83
67 O12 O O12 N N N 0 -8.314 -5.489 -5.832
68 O13 O O13 N N N 0 -9.826 -4.181 -7.709
69 O14 O O14 N N N 0 -10.467 -3.32 -5.149
70 O15 O O15 N N N 0 -10.273 -1.666 -3.179
71 HO1 H HO1 N N N 0 -6.125 -5.331 2.682
72 HO2 H HO2 N N N 0 -6.273 -3.53 -1.338
73 HO5 H HO5 N N N 0 -4.526 2.278 -1.841
74 HO6 H HO6 N N N 0 -4.877 2.539 1.187
75 HO9 H HO9 N N N 0 -0.363 -3.39 0.453
76 H2 H H2 N N N 0 -13.223 -13.075 2.621
77 H9 H H9 N N N 0 -9.547 -5.982 2.843
78 H4 H H4 N N N 0 -11.316 -9.946 3.559
79 H5 H H5 N N N 0 -13.628 -8.364 2.313
80 H6 H H6 N N N 0 -10.95 -7.578 3.67
81 H10 H H10 N N N 0 -9.341 -3.046 3.665
82 H11 H H11 N N N 0 -6.956 -3.397 3.197
83 H12 H H12 N N N 0 -8.674 -4.648 0.992
84 H13 H H13 N N N 0 -6.264 -5.184 0.637
85 H141 H 1H14 N N N 0 -5.867 -2.166 0.636
86 H142 H 2H14 N N N 0 -5.195 -3.282 1.832
87 H15 H H15 N N N 0 -4.481 -3.277 -1.136
88 H16 H H16 N N N 0 -2.87 -2.614 1.352
89 H17 H H17 N N N 0 -3.134 -0.399 1.021
90 H201 H 1H20 N N N 0 -0.829 -1.02 1.192
91 H202 H 2H20 N N N 0 -0.008 0.003 -0.004
92 H21 H H21 N N N 0 1.624 -1.498 0.956
93 H22 H H22 N N N 0 2.252 -2.917 -1.086
94 H23 H H23 N N N 0 0.007 -3.51 -1.84
95 H241 H 1H24 N N N 0 1.692 -3.442 -3.596
96 H242 H 2H24 N N N 0 1.378 -1.73 -3.869
97 H25 H H25 N N N 0 -0.674 -4.02 -4.287
98 H26 H H26 N N N 0 -0.073 -1.374 -5.728
99 H28 H H28 N N N 0 -1.757 -1.0 -7.995
100 H30 H H30 N N N 0 -5.061 -4.175 -8.233
101 H311 H 1H31 N N N 0 -4.078 -6.092 -6.032
102 H312 H 2H31 N N N 0 -5.564 -6.235 -6.957
103 H321 H 1H32 N N N 0 -4.87 -3.93 -5.084
104 H322 H 2H32 N N N 0 -5.976 -5.244 -4.7
105 H411 H 1H41 N N N 0 -3.72 -6.73 -8.344
106 H412 H 2H41 N N N 0 -2.674 -5.502 -9.074
107 H413 H 3H41 N N N 0 -4.321 -5.733 -9.677
108 H421 H 1H42 N N N 0 1.686 0.055 -1.26
109 H422 H 2H42 N N N 0 3.239 -0.789 -1.106
110 H423 H 3H42 N N N 0 2.368 -0.81 -2.651
111 H431 H 1H43 N N N 0 -3.154 1.574 -1.144
112 H432 H 2H43 N N N 0 -1.769 1.242 -0.086
113 H433 H 3H43 N N N 0 -1.56 1.24 -1.847
114 H441 H 1H44 N N N 0 -2.926 -1.728 -2.864
115 H442 H 2H44 N N N 0 -4.366 -0.874 -2.279
116 H443 H 3H44 N N N 0 -3.09 0.018 -3.13
117 H451 H 1H45 N N N 0 -2.801 -5.876 -1.317
118 H452 H 2H45 N N N 0 -1.747 -5.149 -0.065
119 H453 H 3H45 N N N 0 -2.442 -4.13 -1.353
120 H461 H 1H46 N N N 0 -8.741 -2.34 0.076
121 H462 H 2H46 N N N 0 -9.413 -2.413 1.699
122 H463 H 3H46 N N N 0 -7.795 -1.747 1.453
123 H471 H 1H47 N N N 0 -7.553 -4.602 5.332
124 H472 H 2H47 N N N 0 -8.745 -3.39 5.799
125 H473 H 3H47 N N N 0 -9.228 -5.088 5.642
126 H481 H 1H48 N N N 0 -12.642 -3.332 3.301
127 H482 H 2H48 N N N 0 -11.245 -3.056 4.345
128 H483 H 3H48 N N N 0 -12.559 -4.094 4.905
129 H491 H 1H49 N N N 0 -13.182 -4.919 1.432
130 H492 H 2H49 N N N 0 -14.099 -6.345 1.891
131 H493 H 3H49 N N N 0 -14.066 -4.957 2.97
132 H501 H 1H50 N N N 0 -14.794 -11.644 1.673
133 H502 H 2H50 N N N 0 -14.055 -10.183 1.01
134 H503 H 3H50 N N N 0 -14.962 -10.113 2.538
135 H34 H H34 N N N 0 -8.287 -2.837 -7.671
136 H35 H H35 N N N 0 -10.281 -1.833 -6.526
137 H36 H H36 N N N 0 -8.047 -2.372 -4.475
138 H371 H 1H37 N N N 0 -10.13 -0.142 -4.527
139 H372 H 2H37 N N N 0 -8.792 -0.262 -3.388
140 H381 H 1H38 N N N 0 -11.612 -0.168 -2.715
141 H382 H 2H38 N N N 0 -10.245 -0.37 -1.575
142 H383 H 3H38 N N N 0 -11.578 -1.555 -1.595
143 H391 H 1H39 N N N 0 -6.759 -0.589 -4.029
144 H392 H 2H39 N N N 0 -7.429 0.923 -4.681
145 H393 H 3H39 N N N 0 -6.005 0.182 -5.442
146 H401 H 1H40 N N N 0 -8.031 0.522 -7.457
147 H402 H 2H40 N N N 0 -9.044 0.909 -6.048
148 H403 H 3H40 N N N 0 -9.473 -0.456 -7.101
149 HN3 H HN3 N N N 0 -6.427 -2.997 -6.553
150 HO13 H HO13 N N N 0 -10.693 -4.033 -7.296
151 HO14 H HO14 N N N 0 -10.377 -4.224 -5.481