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PDBeChem : Atoms of Molecule
Molecule : CYU
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 151
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
P1 |
P |
P1 |
N |
N |
N |
0 |
-5.294 |
0.854 |
-0.262 |
2 |
O1 |
O |
O1 |
N |
N |
N |
0 |
-7.011 |
-5.413 |
3.066 |
3 |
O2 |
O |
O2 |
N |
N |
N |
0 |
-6.948 |
-4.095 |
-0.933 |
4 |
O3 |
O |
O3 |
N |
N |
N |
0 |
-3.759 |
-4.731 |
0.106 |
5 |
O4 |
O |
O4 |
N |
N |
N |
0 |
-4.826 |
-0.679 |
-0.055 |
6 |
O5 |
O |
O5 |
N |
N |
N |
0 |
-4.375 |
1.377 |
-1.485 |
7 |
O6 |
O |
O6 |
N |
N |
N |
0 |
-4.658 |
1.597 |
1.026 |
8 |
O7 |
O |
O7 |
N |
N |
N |
0 |
-6.772 |
1.05 |
-0.44 |
9 |
O8 |
O |
O8 |
N |
N |
N |
0 |
-1.963 |
-2.71 |
-0.483 |
10 |
O9 |
O |
O9 |
N |
N |
N |
0 |
0.53 |
-3.202 |
0.78 |
11 |
O10 |
O |
O10 |
N |
N |
N |
0 |
-0.658 |
-1.582 |
-2.139 |
12 |
O11 |
O |
O11 |
N |
Y |
N |
0 |
-3.048 |
-2.629 |
-8.115 |
13 |
N1 |
N |
N1 |
N |
N |
N |
0 |
-10.414 |
-12.897 |
4.161 |
14 |
N2 |
N |
N2 |
N |
Y |
N |
0 |
-2.343 |
-3.8 |
-6.313 |
15 |
C1 |
C |
C1 |
N |
N |
N |
0 |
-11.398 |
-12.601 |
3.622 |
16 |
C2 |
C |
C2 |
N |
N |
N |
0 |
-12.606 |
-12.246 |
2.958 |
17 |
C3 |
C |
C3 |
N |
N |
N |
0 |
-13.004 |
-10.984 |
2.709 |
18 |
C4 |
C |
C4 |
N |
N |
N |
0 |
-12.279 |
-9.776 |
3.079 |
19 |
C5 |
C |
C5 |
N |
N |
N |
0 |
-12.686 |
-8.522 |
2.826 |
20 |
C6 |
C |
C6 |
N |
N |
N |
0 |
-11.904 |
-7.359 |
3.19 |
21 |
C7 |
C |
C7 |
N |
N |
N |
0 |
-12.225 |
-6.067 |
2.979 |
22 |
C8 |
C |
C8 |
N |
N |
N |
0 |
-11.306 |
-5.017 |
3.418 |
23 |
C9 |
C |
C9 |
N |
N |
N |
0 |
-9.966 |
-5.089 |
3.307 |
24 |
C10 |
C |
C10 |
R |
N |
N |
0 |
-8.937 |
-4.061 |
3.73 |
25 |
C11 |
C |
C11 |
R |
N |
N |
0 |
-7.663 |
-4.161 |
2.847 |
26 |
C12 |
C |
C12 |
S |
N |
N |
0 |
-7.904 |
-3.939 |
1.322 |
27 |
C13 |
C |
C13 |
S |
N |
N |
0 |
-6.634 |
-4.17 |
0.456 |
28 |
C14 |
C |
C14 |
N |
N |
N |
0 |
-5.492 |
-3.186 |
0.782 |
29 |
C15 |
C |
C15 |
S |
N |
N |
0 |
-4.237 |
-3.404 |
-0.076 |
30 |
C16 |
C |
C16 |
R |
N |
N |
0 |
-3.136 |
-2.427 |
0.305 |
31 |
C17 |
C |
C17 |
S |
N |
N |
0 |
-3.447 |
-0.94 |
0.12 |
32 |
C18 |
C |
C18 |
N |
N |
N |
0 |
-2.574 |
-0.522 |
-1.073 |
33 |
C19 |
C |
C19 |
R |
N |
N |
0 |
-1.35 |
-1.463 |
-0.888 |
34 |
C20 |
C |
C20 |
N |
N |
N |
0 |
-0.35 |
-1.017 |
0.207 |
35 |
C21 |
C |
C21 |
R |
N |
N |
0 |
0.888 |
-1.921 |
0.263 |
36 |
C22 |
C |
C22 |
S |
N |
N |
0 |
1.511 |
-2.109 |
-1.131 |
37 |
C23 |
C |
C23 |
S |
N |
N |
0 |
0.412 |
-2.532 |
-2.128 |
38 |
C24 |
C |
C24 |
N |
N |
N |
0 |
0.913 |
-2.673 |
-3.561 |
39 |
C26 |
C |
C26 |
N |
N |
N |
0 |
-0.585 |
-2.313 |
-5.532 |
40 |
C25 |
C |
C25 |
N |
N |
N |
0 |
-0.198 |
-3.064 |
-4.489 |
41 |
C27 |
C |
C27 |
N |
Y |
N |
0 |
-1.658 |
-2.664 |
-6.478 |
42 |
C29 |
C |
C29 |
N |
Y |
N |
0 |
-3.173 |
-3.733 |
-7.329 |
43 |
C28 |
C |
C28 |
N |
Y |
N |
0 |
-2.034 |
-1.934 |
-7.528 |
44 |
C30 |
C |
C30 |
S |
N |
N |
0 |
-4.215 |
-4.693 |
-7.727 |
45 |
C31 |
C |
C31 |
N |
N |
N |
0 |
-4.85 |
-5.508 |
-6.55 |
46 |
C32 |
C |
C32 |
N |
N |
N |
0 |
-5.579 |
-4.641 |
-5.522 |
47 |
C41 |
C |
C41 |
N |
N |
N |
0 |
-3.704 |
-5.721 |
-8.771 |
48 |
C42 |
C |
C42 |
N |
N |
N |
0 |
2.247 |
-0.834 |
-1.564 |
49 |
C43 |
C |
C43 |
N |
N |
N |
0 |
-2.244 |
0.977 |
-1.035 |
50 |
C44 |
C |
C44 |
N |
N |
N |
0 |
-3.285 |
-0.794 |
-2.422 |
51 |
C45 |
C |
C45 |
N |
N |
N |
0 |
-2.62 |
-4.99 |
-0.703 |
52 |
C46 |
C |
C46 |
N |
N |
N |
0 |
-8.487 |
-2.528 |
1.123 |
53 |
C47 |
C |
C47 |
N |
N |
N |
0 |
-8.6 |
-4.301 |
5.209 |
54 |
C48 |
C |
C48 |
N |
N |
N |
0 |
-11.972 |
-3.81 |
4.025 |
55 |
C49 |
C |
C49 |
N |
N |
N |
0 |
-13.457 |
-5.553 |
2.282 |
56 |
C50 |
C |
C50 |
N |
N |
N |
0 |
-14.271 |
-10.719 |
1.941 |
57 |
C33 |
C |
C33 |
N |
N |
N |
0 |
-7.942 |
-4.393 |
-6.246 |
58 |
C34 |
C |
C34 |
S |
N |
N |
0 |
-8.881 |
-3.427 |
-6.964 |
59 |
C35 |
C |
C35 |
S |
N |
N |
0 |
-9.62 |
-2.508 |
-5.972 |
60 |
C36 |
C |
C36 |
S |
N |
N |
0 |
-8.688 |
-1.689 |
-5.047 |
61 |
C37 |
C |
C37 |
N |
N |
N |
0 |
-9.467 |
-0.851 |
-4.02 |
62 |
C38 |
C |
C38 |
N |
N |
N |
0 |
-10.966 |
-0.891 |
-2.21 |
63 |
C39 |
C |
C39 |
N |
N |
N |
0 |
-6.956 |
-0.027 |
-4.946 |
64 |
C40 |
C |
C40 |
N |
N |
N |
0 |
-8.64 |
0.095 |
-6.655 |
65 |
N3 |
N |
N3 |
N |
N |
N |
0 |
-6.65 |
-3.9 |
-6.142 |
66 |
N4 |
N |
N4 |
N |
N |
N |
0 |
-7.829 |
-0.797 |
-5.83 |
67 |
O12 |
O |
O12 |
N |
N |
N |
0 |
-8.314 |
-5.489 |
-5.832 |
68 |
O13 |
O |
O13 |
N |
N |
N |
0 |
-9.826 |
-4.181 |
-7.709 |
69 |
O14 |
O |
O14 |
N |
N |
N |
0 |
-10.467 |
-3.32 |
-5.149 |
70 |
O15 |
O |
O15 |
N |
N |
N |
0 |
-10.273 |
-1.666 |
-3.179 |
71 |
HO1 |
H |
HO1 |
N |
N |
N |
0 |
-6.125 |
-5.331 |
2.682 |
72 |
HO2 |
H |
HO2 |
N |
N |
N |
0 |
-6.273 |
-3.53 |
-1.338 |
73 |
HO5 |
H |
HO5 |
N |
N |
N |
0 |
-4.526 |
2.278 |
-1.841 |
74 |
HO6 |
H |
HO6 |
N |
N |
N |
0 |
-4.877 |
2.539 |
1.187 |
75 |
HO9 |
H |
HO9 |
N |
N |
N |
0 |
-0.363 |
-3.39 |
0.453 |
76 |
H2 |
H |
H2 |
N |
N |
N |
0 |
-13.223 |
-13.075 |
2.621 |
77 |
H9 |
H |
H9 |
N |
N |
N |
0 |
-9.547 |
-5.982 |
2.843 |
78 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-11.316 |
-9.946 |
3.559 |
79 |
H5 |
H |
H5 |
N |
N |
N |
0 |
-13.628 |
-8.364 |
2.313 |
80 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-10.95 |
-7.578 |
3.67 |
81 |
H10 |
H |
H10 |
N |
N |
N |
0 |
-9.341 |
-3.046 |
3.665 |
82 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-6.956 |
-3.397 |
3.197 |
83 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-8.674 |
-4.648 |
0.992 |
84 |
H13 |
H |
H13 |
N |
N |
N |
0 |
-6.264 |
-5.184 |
0.637 |
85 |
H141 |
H |
1H14 |
N |
N |
N |
0 |
-5.867 |
-2.166 |
0.636 |
86 |
H142 |
H |
2H14 |
N |
N |
N |
0 |
-5.195 |
-3.282 |
1.832 |
87 |
H15 |
H |
H15 |
N |
N |
N |
0 |
-4.481 |
-3.277 |
-1.136 |
88 |
H16 |
H |
H16 |
N |
N |
N |
0 |
-2.87 |
-2.614 |
1.352 |
89 |
H17 |
H |
H17 |
N |
N |
N |
0 |
-3.134 |
-0.399 |
1.021 |
90 |
H201 |
H |
1H20 |
N |
N |
N |
0 |
-0.829 |
-1.02 |
1.192 |
91 |
H202 |
H |
2H20 |
N |
N |
N |
0 |
-0.008 |
0.003 |
-0.004 |
92 |
H21 |
H |
H21 |
N |
N |
N |
0 |
1.624 |
-1.498 |
0.956 |
93 |
H22 |
H |
H22 |
N |
N |
N |
0 |
2.252 |
-2.917 |
-1.086 |
94 |
H23 |
H |
H23 |
N |
N |
N |
0 |
0.007 |
-3.51 |
-1.84 |
95 |
H241 |
H |
1H24 |
N |
N |
N |
0 |
1.692 |
-3.442 |
-3.596 |
96 |
H242 |
H |
2H24 |
N |
N |
N |
0 |
1.378 |
-1.73 |
-3.869 |
97 |
H25 |
H |
H25 |
N |
N |
N |
0 |
-0.674 |
-4.02 |
-4.287 |
98 |
H26 |
H |
H26 |
N |
N |
N |
0 |
-0.073 |
-1.374 |
-5.728 |
99 |
H28 |
H |
H28 |
N |
N |
N |
0 |
-1.757 |
-1.0 |
-7.995 |
100 |
H30 |
H |
H30 |
N |
N |
N |
0 |
-5.061 |
-4.175 |
-8.233 |
101 |
H311 |
H |
1H31 |
N |
N |
N |
0 |
-4.078 |
-6.092 |
-6.032 |
102 |
H312 |
H |
2H31 |
N |
N |
N |
0 |
-5.564 |
-6.235 |
-6.957 |
103 |
H321 |
H |
1H32 |
N |
N |
N |
0 |
-4.87 |
-3.93 |
-5.084 |
104 |
H322 |
H |
2H32 |
N |
N |
N |
0 |
-5.976 |
-5.244 |
-4.7 |
105 |
H411 |
H |
1H41 |
N |
N |
N |
0 |
-3.72 |
-6.73 |
-8.344 |
106 |
H412 |
H |
2H41 |
N |
N |
N |
0 |
-2.674 |
-5.502 |
-9.074 |
107 |
H413 |
H |
3H41 |
N |
N |
N |
0 |
-4.321 |
-5.733 |
-9.677 |
108 |
H421 |
H |
1H42 |
N |
N |
N |
0 |
1.686 |
0.055 |
-1.26 |
109 |
H422 |
H |
2H42 |
N |
N |
N |
0 |
3.239 |
-0.789 |
-1.106 |
110 |
H423 |
H |
3H42 |
N |
N |
N |
0 |
2.368 |
-0.81 |
-2.651 |
111 |
H431 |
H |
1H43 |
N |
N |
N |
0 |
-3.154 |
1.574 |
-1.144 |
112 |
H432 |
H |
2H43 |
N |
N |
N |
0 |
-1.769 |
1.242 |
-0.086 |
113 |
H433 |
H |
3H43 |
N |
N |
N |
0 |
-1.56 |
1.24 |
-1.847 |
114 |
H441 |
H |
1H44 |
N |
N |
N |
0 |
-2.926 |
-1.728 |
-2.864 |
115 |
H442 |
H |
2H44 |
N |
N |
N |
0 |
-4.366 |
-0.874 |
-2.279 |
116 |
H443 |
H |
3H44 |
N |
N |
N |
0 |
-3.09 |
0.018 |
-3.13 |
117 |
H451 |
H |
1H45 |
N |
N |
N |
0 |
-2.801 |
-5.876 |
-1.317 |
118 |
H452 |
H |
2H45 |
N |
N |
N |
0 |
-1.747 |
-5.149 |
-0.065 |
119 |
H453 |
H |
3H45 |
N |
N |
N |
0 |
-2.442 |
-4.13 |
-1.353 |
120 |
H461 |
H |
1H46 |
N |
N |
N |
0 |
-8.741 |
-2.34 |
0.076 |
121 |
H462 |
H |
2H46 |
N |
N |
N |
0 |
-9.413 |
-2.413 |
1.699 |
122 |
H463 |
H |
3H46 |
N |
N |
N |
0 |
-7.795 |
-1.747 |
1.453 |
123 |
H471 |
H |
1H47 |
N |
N |
N |
0 |
-7.553 |
-4.602 |
5.332 |
124 |
H472 |
H |
2H47 |
N |
N |
N |
0 |
-8.745 |
-3.39 |
5.799 |
125 |
H473 |
H |
3H47 |
N |
N |
N |
0 |
-9.228 |
-5.088 |
5.642 |
126 |
H481 |
H |
1H48 |
N |
N |
N |
0 |
-12.642 |
-3.332 |
3.301 |
127 |
H482 |
H |
2H48 |
N |
N |
N |
0 |
-11.245 |
-3.056 |
4.345 |
128 |
H483 |
H |
3H48 |
N |
N |
N |
0 |
-12.559 |
-4.094 |
4.905 |
129 |
H491 |
H |
1H49 |
N |
N |
N |
0 |
-13.182 |
-4.919 |
1.432 |
130 |
H492 |
H |
2H49 |
N |
N |
N |
0 |
-14.099 |
-6.345 |
1.891 |
131 |
H493 |
H |
3H49 |
N |
N |
N |
0 |
-14.066 |
-4.957 |
2.97 |
132 |
H501 |
H |
1H50 |
N |
N |
N |
0 |
-14.794 |
-11.644 |
1.673 |
133 |
H502 |
H |
2H50 |
N |
N |
N |
0 |
-14.055 |
-10.183 |
1.01 |
134 |
H503 |
H |
3H50 |
N |
N |
N |
0 |
-14.962 |
-10.113 |
2.538 |
135 |
H34 |
H |
H34 |
N |
N |
N |
0 |
-8.287 |
-2.837 |
-7.671 |
136 |
H35 |
H |
H35 |
N |
N |
N |
0 |
-10.281 |
-1.833 |
-6.526 |
137 |
H36 |
H |
H36 |
N |
N |
N |
0 |
-8.047 |
-2.372 |
-4.475 |
138 |
H371 |
H |
1H37 |
N |
N |
N |
0 |
-10.13 |
-0.142 |
-4.527 |
139 |
H372 |
H |
2H37 |
N |
N |
N |
0 |
-8.792 |
-0.262 |
-3.388 |
140 |
H381 |
H |
1H38 |
N |
N |
N |
0 |
-11.612 |
-0.168 |
-2.715 |
141 |
H382 |
H |
2H38 |
N |
N |
N |
0 |
-10.245 |
-0.37 |
-1.575 |
142 |
H383 |
H |
3H38 |
N |
N |
N |
0 |
-11.578 |
-1.555 |
-1.595 |
143 |
H391 |
H |
1H39 |
N |
N |
N |
0 |
-6.759 |
-0.589 |
-4.029 |
144 |
H392 |
H |
2H39 |
N |
N |
N |
0 |
-7.429 |
0.923 |
-4.681 |
145 |
H393 |
H |
3H39 |
N |
N |
N |
0 |
-6.005 |
0.182 |
-5.442 |
146 |
H401 |
H |
1H40 |
N |
N |
N |
0 |
-8.031 |
0.522 |
-7.457 |
147 |
H402 |
H |
2H40 |
N |
N |
N |
0 |
-9.044 |
0.909 |
-6.048 |
148 |
H403 |
H |
3H40 |
N |
N |
N |
0 |
-9.473 |
-0.456 |
-7.101 |
149 |
HN3 |
H |
HN3 |
N |
N |
N |
0 |
-6.427 |
-2.997 |
-6.553 |
150 |
HO13 |
H |
HO13 |
N |
N |
N |
0 |
-10.693 |
-4.033 |
-7.296 |
151 |
HO14 |
H |
HO14 |
N |
N |
N |
0 |
-10.377 |
-4.224 |
-5.481 |
|