Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CYZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 0.431 0.389 -2.907
2 C2 C C2 S N N 0 -0.323 0.802 -4.21
3 C3 C C3 N N N 0 0.03 -0.305 -5.209
4 C4 C C4 N N N 0 1.329 -0.189 -5.538
5 C5 C C5 S N N 0 1.887 1.014 -4.77
6 C6 C C6 N N N 0 1.926 0.533 -3.284
7 S1 S S1 N N N 0 -1.958 -0.289 -1.036
8 C7 C C7 N N N 0 0.622 1.947 -4.733
9 C8 C C8 S N N 0 0.108 -1.059 -2.535
10 N1 N N1 N N N 0 -1.341 -1.199 -2.291
11 C9 C C9 N Y N 0 -0.729 -0.371 0.231
12 C10 C C10 N Y N 0 0.519 -0.905 -0.061
13 C13 C C13 N Y N 0 1.212 -0.442 2.194
14 N2 N N2 N N N 0 0.826 -1.423 -1.316
15 C11 C C11 N Y N 0 -1.01 0.107 1.493
16 C12 C C12 N Y N 0 -0.04 0.07 2.479
17 C14 C C14 N Y N 0 1.493 -0.933 0.934
18 CL CL CL N N N 0 2.432 -0.481 3.428
19 S2 S S2 N N N 0 -0.398 0.681 4.093
20 O1 O O1 N N N 0 -3.082 -1.007 -0.543
21 O2 O O2 N N N 0 -1.968 1.056 -1.491
22 O3 O O3 N N N 0 -1.79 0.969 4.097
23 O4 O O4 N N N 0 0.634 1.61 4.392
24 N3 N N3 N N N 0 -0.196 -0.574 5.153
25 H11A H 1H1 N N N 0 0.177 1.06 -2.087
26 H51 H 1H5 N N N 0 2.806 1.452 -5.159
27 H21 H 1H2 N N N 0 -1.381 1.048 -4.114
28 H31A H 1H3 N N N 0 -0.648 -1.056 -5.586
29 H41 H 1H4 N N N 0 1.866 -0.828 -6.222
30 H61 H 1H6 N N N 0 2.411 1.278 -2.653
31 H62 H 2H6 N N N 0 2.436 -0.427 -3.206
32 H71 H 1H7 N N N 0 0.724 2.762 -4.016
33 H72 H 2H7 N N N 0 0.337 2.304 -5.722
34 H81 H 1H8 N N N 0 0.408 -1.721 -3.347
35 HN1 H HN1 N N N 0 -1.899 -1.784 -2.827
36 HN2 H HN2 N N N 0 1.555 -2.06 -1.384
37 H11 H H11 N N N 0 -1.987 0.511 1.712
38 H14 H H14 N N N 0 2.471 -1.335 0.719
39 H31 H H31 N N N 0 -0.347 -0.437 6.102
40 H32 H H32 N N N 0 0.07 -1.447 4.826