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PDBeChem : Atoms of Molecule
Molecule : CZD
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 126
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C4 |
C |
C1 |
N |
Y |
N |
0 |
8.516 |
0.112 |
-0.071 |
2 |
C14 |
C |
C2 |
N |
N |
N |
0 |
14.074 |
2.597 |
-2.144 |
3 |
C5 |
C |
C3 |
N |
Y |
N |
0 |
9.831 |
0.386 |
-0.696 |
4 |
C6 |
C |
C4 |
N |
Y |
N |
0 |
9.969 |
1.437 |
-1.603 |
5 |
C11 |
C |
C5 |
N |
N |
N |
0 |
13.625 |
1.179 |
-2.502 |
6 |
C7 |
C |
C6 |
N |
Y |
N |
0 |
11.196 |
1.688 |
-2.182 |
7 |
C8 |
C |
C7 |
N |
Y |
N |
0 |
12.288 |
0.9 |
-1.865 |
8 |
C9 |
C |
C8 |
N |
Y |
N |
0 |
12.157 |
-0.144 |
-0.966 |
9 |
C10 |
C |
C9 |
N |
Y |
N |
0 |
10.936 |
-0.401 |
-0.376 |
10 |
C12 |
C |
C10 |
N |
N |
N |
0 |
13.503 |
1.051 |
-4.021 |
11 |
C13 |
C |
C11 |
N |
N |
N |
0 |
14.655 |
0.172 |
-1.986 |
12 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
8.41 |
-0.89 |
0.794 |
13 |
N2 |
N |
N2 |
N |
N |
N |
0 |
3.738 |
0.035 |
1.3 |
14 |
C3 |
C |
C12 |
N |
Y |
N |
0 |
6.292 |
0.666 |
0.149 |
15 |
N3 |
N |
N3 |
N |
N |
N |
0 |
3.224 |
0.918 |
5.452 |
16 |
N |
N |
N4 |
N |
Y |
N |
0 |
7.479 |
0.878 |
-0.387 |
17 |
C |
C |
C13 |
N |
N |
N |
0 |
7.148 |
-2.303 |
2.356 |
18 |
O |
O |
O1 |
N |
N |
N |
0 |
4.737 |
-1.486 |
2.574 |
19 |
C1 |
C |
C14 |
N |
Y |
N |
0 |
7.258 |
-1.163 |
1.376 |
20 |
C15 |
C |
C15 |
N |
N |
N |
0 |
4.83 |
-0.648 |
1.698 |
21 |
C16 |
C |
C16 |
S |
N |
N |
0 |
2.439 |
-0.233 |
1.923 |
22 |
C17 |
C |
C17 |
N |
N |
N |
0 |
2.308 |
0.593 |
3.204 |
23 |
C18 |
C |
C18 |
N |
N |
N |
0 |
3.35 |
0.124 |
4.222 |
24 |
C19 |
C |
C19 |
N |
N |
N |
0 |
1.336 |
0.144 |
0.968 |
25 |
C2 |
C |
C20 |
N |
Y |
N |
0 |
6.139 |
-0.378 |
1.07 |
26 |
C20 |
C |
C21 |
N |
N |
N |
0 |
-0.281 |
-0.558 |
2.65 |
27 |
C21 |
C |
C22 |
S |
N |
N |
0 |
-1.025 |
0.349 |
0.4 |
28 |
C22 |
C |
C23 |
N |
Y |
N |
0 |
-1.87 |
-0.864 |
0.093 |
29 |
C23 |
C |
C24 |
N |
Y |
N |
0 |
-1.293 |
-2.104 |
-0.096 |
30 |
C24 |
C |
C25 |
N |
Y |
N |
0 |
-2.086 |
-3.205 |
-0.37 |
31 |
C25 |
C |
C26 |
N |
Y |
N |
0 |
-3.465 |
-3.067 |
-0.458 |
32 |
C26 |
C |
C27 |
N |
Y |
N |
0 |
-4.046 |
-1.815 |
-0.262 |
33 |
C27 |
C |
C28 |
N |
Y |
N |
0 |
-3.239 |
-0.71 |
0.012 |
34 |
C28 |
C |
C29 |
N |
Y |
N |
0 |
-5.514 |
-1.614 |
-0.34 |
35 |
C29 |
C |
C30 |
N |
Y |
N |
0 |
-6.026 |
-0.34 |
-0.09 |
36 |
C30 |
C |
C31 |
N |
Y |
N |
0 |
-7.385 |
-0.121 |
-0.156 |
37 |
C31 |
C |
C32 |
N |
Y |
N |
0 |
-8.246 |
-1.159 |
-0.469 |
38 |
C32 |
C |
C33 |
N |
Y |
N |
0 |
-7.747 |
-2.424 |
-0.718 |
39 |
C33 |
C |
C34 |
N |
Y |
N |
0 |
-6.381 |
-2.66 |
-0.657 |
40 |
C34 |
C |
C35 |
N |
N |
N |
0 |
-5.599 |
-4.723 |
0.227 |
41 |
C35 |
C |
C36 |
N |
N |
N |
0 |
-4.976 |
-6.038 |
-0.244 |
42 |
C36 |
C |
C37 |
N |
N |
N |
0 |
-7.924 |
1.26 |
0.12 |
43 |
C37 |
C |
C38 |
S |
N |
N |
0 |
-6.93 |
2.304 |
-0.393 |
44 |
C38 |
C |
C39 |
N |
N |
N |
0 |
-4.738 |
3.163 |
0.119 |
45 |
C39 |
C |
C40 |
S |
N |
N |
0 |
-3.468 |
3.211 |
0.926 |
46 |
C40 |
C |
C41 |
N |
N |
N |
0 |
-1.915 |
1.391 |
1.034 |
47 |
C41 |
C |
C42 |
N |
N |
N |
0 |
-2.978 |
4.657 |
1.029 |
48 |
C42 |
C |
C43 |
N |
N |
N |
0 |
-7.545 |
3.676 |
-0.294 |
49 |
C45 |
C |
C44 |
N |
N |
N |
0 |
-4.65 |
-4.322 |
-2.092 |
50 |
C46 |
C |
C45 |
N |
N |
N |
0 |
-5.218 |
-5.731 |
-2.276 |
51 |
N10 |
N |
N5 |
N |
N |
N |
0 |
-6.61 |
-5.763 |
-1.807 |
52 |
N4 |
N |
N6 |
N |
N |
N |
0 |
0.048 |
-0.017 |
1.329 |
53 |
N5 |
N |
N7 |
N |
N |
N |
0 |
-3.616 |
-5.786 |
-0.74 |
54 |
N6 |
N |
N8 |
N |
N |
N |
0 |
-5.703 |
2.251 |
0.433 |
55 |
N7 |
N |
N9 |
N |
N |
N |
0 |
-2.443 |
2.379 |
0.243 |
56 |
O1 |
O |
O2 |
N |
N |
N |
0 |
1.608 |
0.592 |
-0.126 |
57 |
O2 |
O |
O3 |
N |
N |
N |
0 |
-5.892 |
-3.902 |
-0.906 |
58 |
O3 |
O |
O4 |
N |
N |
N |
0 |
-4.903 |
3.931 |
-0.805 |
59 |
O4 |
O |
O5 |
N |
N |
N |
0 |
-2.159 |
1.355 |
2.221 |
60 |
O5 |
O |
O6 |
N |
N |
N |
0 |
-7.261 |
4.402 |
0.635 |
61 |
O6 |
O |
O7 |
N |
N |
N |
0 |
-4.243 |
-4.146 |
-0.734 |
62 |
C43 |
C |
C46 |
N |
N |
N |
0 |
-9.007 |
5.431 |
-1.142 |
63 |
C44 |
C |
C47 |
N |
N |
N |
0 |
-9.931 |
5.653 |
-2.312 |
64 |
N8 |
N |
N10 |
N |
N |
N |
0 |
-8.41 |
4.097 |
-1.238 |
65 |
N9 |
N |
N11 |
N |
N |
N |
0 |
-11.15 |
5.984 |
-2.111 |
66 |
H1 |
H |
H1 |
N |
N |
N |
0 |
14.161 |
2.688 |
-1.061 |
67 |
H2 |
H |
H2 |
N |
N |
N |
0 |
15.041 |
2.799 |
-2.604 |
68 |
H3 |
H |
H3 |
N |
N |
N |
0 |
13.34 |
3.314 |
-2.511 |
69 |
H4 |
H |
H4 |
N |
N |
N |
0 |
9.117 |
2.052 |
-1.852 |
70 |
H5 |
H |
H5 |
N |
N |
N |
0 |
11.304 |
2.501 |
-2.885 |
71 |
H6 |
H |
H6 |
N |
N |
N |
0 |
13.013 |
-0.756 |
-0.722 |
72 |
H7 |
H |
H7 |
N |
N |
N |
0 |
10.835 |
-1.216 |
0.325 |
73 |
H8 |
H |
H8 |
N |
N |
N |
0 |
14.47 |
1.252 |
-4.482 |
74 |
H9 |
H |
H9 |
N |
N |
N |
0 |
13.183 |
0.04 |
-4.276 |
75 |
H10 |
H |
H10 |
N |
N |
N |
0 |
12.769 |
1.768 |
-4.389 |
76 |
H11 |
H |
H11 |
N |
N |
N |
0 |
14.742 |
0.264 |
-0.903 |
77 |
H12 |
H |
H12 |
N |
N |
N |
0 |
14.335 |
-0.838 |
-2.24 |
78 |
H13 |
H |
H13 |
N |
N |
N |
0 |
15.622 |
0.374 |
-2.446 |
79 |
H14 |
H |
H14 |
N |
N |
N |
0 |
3.812 |
0.703 |
0.601 |
80 |
H15 |
H |
H15 |
N |
N |
N |
0 |
5.453 |
1.294 |
-0.113 |
81 |
H16 |
H |
H16 |
N |
N |
N |
0 |
2.287 |
0.865 |
5.823 |
82 |
H17 |
H |
H17 |
N |
N |
N |
0 |
3.902 |
0.627 |
6.141 |
83 |
H19 |
H |
H19 |
N |
N |
N |
0 |
7.42 |
-1.952 |
3.352 |
84 |
H20 |
H |
H20 |
N |
N |
N |
0 |
6.123 |
-2.674 |
2.368 |
85 |
H21 |
H |
H21 |
N |
N |
N |
0 |
7.822 |
-3.105 |
2.057 |
86 |
H22 |
H |
H22 |
N |
N |
N |
0 |
2.364 |
-1.293 |
2.165 |
87 |
H23 |
H |
H23 |
N |
N |
N |
0 |
2.472 |
1.646 |
2.976 |
88 |
H24 |
H |
H24 |
N |
N |
N |
0 |
1.309 |
0.463 |
3.621 |
89 |
H25 |
H |
H25 |
N |
N |
N |
0 |
4.349 |
0.255 |
3.806 |
90 |
H26 |
H |
H26 |
N |
N |
N |
0 |
3.186 |
-0.929 |
4.451 |
91 |
H27 |
H |
H27 |
N |
N |
N |
0 |
-0.373 |
0.26 |
3.365 |
92 |
H28 |
H |
H28 |
N |
N |
N |
0 |
-1.224 |
-1.101 |
2.596 |
93 |
H29 |
H |
H29 |
N |
N |
N |
0 |
0.51 |
-1.235 |
2.972 |
94 |
H30 |
H |
H30 |
N |
N |
N |
0 |
-0.595 |
0.742 |
-0.521 |
95 |
H31 |
H |
H31 |
N |
N |
N |
0 |
-0.221 |
-2.216 |
-0.031 |
96 |
H32 |
H |
H32 |
N |
N |
N |
0 |
-1.632 |
-4.174 |
-0.516 |
97 |
H33 |
H |
H33 |
N |
N |
N |
0 |
-3.684 |
0.262 |
0.16 |
98 |
H36 |
H |
H36 |
N |
N |
N |
0 |
-8.422 |
-3.231 |
-0.96 |
99 |
H34 |
H |
H34 |
N |
N |
N |
0 |
-5.359 |
0.472 |
0.154 |
100 |
H35 |
H |
H35 |
N |
N |
N |
0 |
-9.31 |
-0.979 |
-0.519 |
101 |
H42 |
H |
H42 |
N |
N |
N |
0 |
-8.066 |
1.387 |
1.193 |
102 |
H37 |
H |
H37 |
N |
N |
N |
0 |
-6.52 |
-4.932 |
0.771 |
103 |
H38 |
H |
H38 |
N |
N |
N |
0 |
-4.9 |
-4.203 |
0.881 |
104 |
H39 |
H |
H39 |
N |
N |
N |
0 |
-4.934 |
-6.74 |
0.59 |
105 |
H40 |
H |
H40 |
N |
N |
N |
0 |
-5.582 |
-6.462 |
-1.045 |
106 |
H41 |
H |
H41 |
N |
N |
N |
0 |
-8.879 |
1.386 |
-0.39 |
107 |
H43 |
H |
H43 |
N |
N |
N |
0 |
-6.679 |
2.09 |
-1.432 |
108 |
H44 |
H |
H44 |
N |
N |
N |
0 |
-3.654 |
2.816 |
1.925 |
109 |
H45 |
H |
H45 |
N |
N |
N |
0 |
-3.741 |
5.265 |
1.516 |
110 |
H46 |
H |
H46 |
N |
N |
N |
0 |
-2.059 |
4.689 |
1.614 |
111 |
H47 |
H |
H47 |
N |
N |
N |
0 |
-2.787 |
5.048 |
0.029 |
112 |
H48 |
H |
H48 |
N |
N |
N |
0 |
-3.791 |
-4.188 |
-2.749 |
113 |
H49 |
H |
H49 |
N |
N |
N |
0 |
-5.416 |
-3.587 |
-2.34 |
114 |
H50 |
H |
H50 |
N |
N |
N |
0 |
-5.184 |
-6.002 |
-3.331 |
115 |
H51 |
H |
H51 |
N |
N |
N |
0 |
-4.624 |
-6.44 |
-1.7 |
116 |
H52 |
H |
H52 |
N |
N |
N |
0 |
-7.059 |
-6.628 |
-2.067 |
117 |
H53 |
H |
H53 |
N |
N |
N |
0 |
-6.659 |
-5.614 |
-0.811 |
118 |
H55 |
H |
H55 |
N |
N |
N |
0 |
-3.118 |
-6.651 |
-0.885 |
119 |
H58 |
H |
H58 |
N |
N |
N |
0 |
-5.592 |
1.609 |
1.151 |
120 |
H56 |
H |
H56 |
N |
N |
N |
0 |
-3.636 |
-5.234 |
-1.584 |
121 |
H59 |
H |
H59 |
N |
N |
N |
0 |
-2.173 |
2.521 |
-0.678 |
122 |
H63 |
H |
H63 |
N |
N |
N |
0 |
-8.637 |
3.516 |
-1.981 |
123 |
H60 |
H |
H60 |
N |
N |
N |
0 |
-8.219 |
6.184 |
-1.153 |
124 |
H61 |
H |
H61 |
N |
N |
N |
0 |
-9.573 |
5.51 |
-0.213 |
125 |
H62 |
H |
H62 |
N |
N |
N |
0 |
-9.563 |
5.532 |
-3.32 |
126 |
H64 |
H |
H64 |
N |
N |
N |
0 |
-11.744 |
6.127 |
-2.864 |
|