Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : CZD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 126


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 8.516 0.112 -0.071
2 C14 C C2 N N N 0 14.074 2.597 -2.144
3 C5 C C3 N Y N 0 9.831 0.386 -0.696
4 C6 C C4 N Y N 0 9.969 1.437 -1.603
5 C11 C C5 N N N 0 13.625 1.179 -2.502
6 C7 C C6 N Y N 0 11.196 1.688 -2.182
7 C8 C C7 N Y N 0 12.288 0.9 -1.865
8 C9 C C8 N Y N 0 12.157 -0.144 -0.966
9 C10 C C9 N Y N 0 10.936 -0.401 -0.376
10 C12 C C10 N N N 0 13.503 1.051 -4.021
11 C13 C C11 N N N 0 14.655 0.172 -1.986
12 N1 N N1 N Y N 0 8.41 -0.89 0.794
13 N2 N N2 N N N 0 3.738 0.035 1.3
14 C3 C C12 N Y N 0 6.292 0.666 0.149
15 N3 N N3 N N N 0 3.224 0.918 5.452
16 N N N4 N Y N 0 7.479 0.878 -0.387
17 C C C13 N N N 0 7.148 -2.303 2.356
18 O O O1 N N N 0 4.737 -1.486 2.574
19 C1 C C14 N Y N 0 7.258 -1.163 1.376
20 C15 C C15 N N N 0 4.83 -0.648 1.698
21 C16 C C16 S N N 0 2.439 -0.233 1.923
22 C17 C C17 N N N 0 2.308 0.593 3.204
23 C18 C C18 N N N 0 3.35 0.124 4.222
24 C19 C C19 N N N 0 1.336 0.144 0.968
25 C2 C C20 N Y N 0 6.139 -0.378 1.07
26 C20 C C21 N N N 0 -0.281 -0.558 2.65
27 C21 C C22 S N N 0 -1.025 0.349 0.4
28 C22 C C23 N Y N 0 -1.87 -0.864 0.093
29 C23 C C24 N Y N 0 -1.293 -2.104 -0.096
30 C24 C C25 N Y N 0 -2.086 -3.205 -0.37
31 C25 C C26 N Y N 0 -3.465 -3.067 -0.458
32 C26 C C27 N Y N 0 -4.046 -1.815 -0.262
33 C27 C C28 N Y N 0 -3.239 -0.71 0.012
34 C28 C C29 N Y N 0 -5.514 -1.614 -0.34
35 C29 C C30 N Y N 0 -6.026 -0.34 -0.09
36 C30 C C31 N Y N 0 -7.385 -0.121 -0.156
37 C31 C C32 N Y N 0 -8.246 -1.159 -0.469
38 C32 C C33 N Y N 0 -7.747 -2.424 -0.718
39 C33 C C34 N Y N 0 -6.381 -2.66 -0.657
40 C34 C C35 N N N 0 -5.599 -4.723 0.227
41 C35 C C36 N N N 0 -4.976 -6.038 -0.244
42 C36 C C37 N N N 0 -7.924 1.26 0.12
43 C37 C C38 S N N 0 -6.93 2.304 -0.393
44 C38 C C39 N N N 0 -4.738 3.163 0.119
45 C39 C C40 S N N 0 -3.468 3.211 0.926
46 C40 C C41 N N N 0 -1.915 1.391 1.034
47 C41 C C42 N N N 0 -2.978 4.657 1.029
48 C42 C C43 N N N 0 -7.545 3.676 -0.294
49 C45 C C44 N N N 0 -4.65 -4.322 -2.092
50 C46 C C45 N N N 0 -5.218 -5.731 -2.276
51 N10 N N5 N N N 0 -6.61 -5.763 -1.807
52 N4 N N6 N N N 0 0.048 -0.017 1.329
53 N5 N N7 N N N 0 -3.616 -5.786 -0.74
54 N6 N N8 N N N 0 -5.703 2.251 0.433
55 N7 N N9 N N N 0 -2.443 2.379 0.243
56 O1 O O2 N N N 0 1.608 0.592 -0.126
57 O2 O O3 N N N 0 -5.892 -3.902 -0.906
58 O3 O O4 N N N 0 -4.903 3.931 -0.805
59 O4 O O5 N N N 0 -2.159 1.355 2.221
60 O5 O O6 N N N 0 -7.261 4.402 0.635
61 O6 O O7 N N N 0 -4.243 -4.146 -0.734
62 C43 C C46 N N N 0 -9.007 5.431 -1.142
63 C44 C C47 N N N 0 -9.931 5.653 -2.312
64 N8 N N10 N N N 0 -8.41 4.097 -1.238
65 N9 N N11 N N N 0 -11.15 5.984 -2.111
66 H1 H H1 N N N 0 14.161 2.688 -1.061
67 H2 H H2 N N N 0 15.041 2.799 -2.604
68 H3 H H3 N N N 0 13.34 3.314 -2.511
69 H4 H H4 N N N 0 9.117 2.052 -1.852
70 H5 H H5 N N N 0 11.304 2.501 -2.885
71 H6 H H6 N N N 0 13.013 -0.756 -0.722
72 H7 H H7 N N N 0 10.835 -1.216 0.325
73 H8 H H8 N N N 0 14.47 1.252 -4.482
74 H9 H H9 N N N 0 13.183 0.04 -4.276
75 H10 H H10 N N N 0 12.769 1.768 -4.389
76 H11 H H11 N N N 0 14.742 0.264 -0.903
77 H12 H H12 N N N 0 14.335 -0.838 -2.24
78 H13 H H13 N N N 0 15.622 0.374 -2.446
79 H14 H H14 N N N 0 3.812 0.703 0.601
80 H15 H H15 N N N 0 5.453 1.294 -0.113
81 H16 H H16 N N N 0 2.287 0.865 5.823
82 H17 H H17 N N N 0 3.902 0.627 6.141
83 H19 H H19 N N N 0 7.42 -1.952 3.352
84 H20 H H20 N N N 0 6.123 -2.674 2.368
85 H21 H H21 N N N 0 7.822 -3.105 2.057
86 H22 H H22 N N N 0 2.364 -1.293 2.165
87 H23 H H23 N N N 0 2.472 1.646 2.976
88 H24 H H24 N N N 0 1.309 0.463 3.621
89 H25 H H25 N N N 0 4.349 0.255 3.806
90 H26 H H26 N N N 0 3.186 -0.929 4.451
91 H27 H H27 N N N 0 -0.373 0.26 3.365
92 H28 H H28 N N N 0 -1.224 -1.101 2.596
93 H29 H H29 N N N 0 0.51 -1.235 2.972
94 H30 H H30 N N N 0 -0.595 0.742 -0.521
95 H31 H H31 N N N 0 -0.221 -2.216 -0.031
96 H32 H H32 N N N 0 -1.632 -4.174 -0.516
97 H33 H H33 N N N 0 -3.684 0.262 0.16
98 H36 H H36 N N N 0 -8.422 -3.231 -0.96
99 H34 H H34 N N N 0 -5.359 0.472 0.154
100 H35 H H35 N N N 0 -9.31 -0.979 -0.519
101 H42 H H42 N N N 0 -8.066 1.387 1.193
102 H37 H H37 N N N 0 -6.52 -4.932 0.771
103 H38 H H38 N N N 0 -4.9 -4.203 0.881
104 H39 H H39 N N N 0 -4.934 -6.74 0.59
105 H40 H H40 N N N 0 -5.582 -6.462 -1.045
106 H41 H H41 N N N 0 -8.879 1.386 -0.39
107 H43 H H43 N N N 0 -6.679 2.09 -1.432
108 H44 H H44 N N N 0 -3.654 2.816 1.925
109 H45 H H45 N N N 0 -3.741 5.265 1.516
110 H46 H H46 N N N 0 -2.059 4.689 1.614
111 H47 H H47 N N N 0 -2.787 5.048 0.029
112 H48 H H48 N N N 0 -3.791 -4.188 -2.749
113 H49 H H49 N N N 0 -5.416 -3.587 -2.34
114 H50 H H50 N N N 0 -5.184 -6.002 -3.331
115 H51 H H51 N N N 0 -4.624 -6.44 -1.7
116 H52 H H52 N N N 0 -7.059 -6.628 -2.067
117 H53 H H53 N N N 0 -6.659 -5.614 -0.811
118 H55 H H55 N N N 0 -3.118 -6.651 -0.885
119 H58 H H58 N N N 0 -5.592 1.609 1.151
120 H56 H H56 N N N 0 -3.636 -5.234 -1.584
121 H59 H H59 N N N 0 -2.173 2.521 -0.678
122 H63 H H63 N N N 0 -8.637 3.516 -1.981
123 H60 H H60 N N N 0 -8.219 6.184 -1.153
124 H61 H H61 N N N 0 -9.573 5.51 -0.213
125 H62 H H62 N N N 0 -9.563 5.532 -3.32
126 H64 H H64 N N N 0 -11.744 6.127 -2.864