Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D2A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -5.932 -0.6 -1.002
2 C2 C C2 N Y N 0 -4.556 -0.654 -0.983
3 C3 C C3 N Y N 0 -3.845 0.015 0.014
4 C4 C C4 N Y N 0 -4.528 0.744 0.988
5 C5 C C5 N Y N 0 -5.904 0.804 0.965
6 C6 C C6 N Y N 0 -6.615 0.134 -0.032
7 C7 C C7 N Y N 0 -2.365 -0.048 0.038
8 C8 C C8 N Y N 0 -1.713 -1.245 -0.261
9 C9 C C9 N Y N 0 -0.338 -1.305 -0.239
10 C10 C C10 N Y N 0 0.405 -0.167 0.083
11 C11 C C11 N Y N 0 -0.248 1.031 0.383
12 C12 C C12 N Y N 0 -1.623 1.09 0.355
13 C13 C C13 N Y N 0 1.881 -0.231 0.108
14 N14 N N14 N Y N 0 2.586 -1.233 0.576
15 C15 C C15 N Y N 0 3.901 -0.969 0.444
16 C16 C C16 N Y N 0 4.012 0.305 -0.146
17 N17 N N17 N Y N 0 2.719 0.75 -0.349
18 C18 C C18 N Y N 0 5.262 0.844 -0.398
19 C19 C C19 N Y N 0 5.06 -1.683 0.773
20 C20 C C20 N Y N 0 6.287 -1.147 0.522
21 C21 C C21 N Y N 0 6.404 0.119 -0.064
22 C22 C C22 N N N 0 7.743 0.688 -0.331
23 N23 N N23 N N N 0 8.874 -0.028 -0.002
24 N24 N N24 N N N 0 7.853 1.866 -0.878
25 C25 C C25 N N N 0 -8.093 0.198 -0.056
26 N26 N N26 N N N 0 -8.795 -0.463 -1.041
27 N27 N N27 N N N 0 -8.731 0.88 0.853
28 H1 H H1 N N N 0 -6.482 -1.119 -1.774
29 H2 H H2 N N N 0 -4.027 -1.218 -1.737
30 H4 H H4 N N N 0 -3.978 1.263 1.759
31 H5 H H5 N N N 0 -6.432 1.369 1.719
32 H8 H H8 N N N 0 -2.288 -2.125 -0.511
33 H9 H H9 N N N 0 0.166 -2.232 -0.47
34 H11 H H11 N N N 0 0.326 1.911 0.632
35 H12 H H12 N N N 0 -2.128 2.016 0.586
36 H17 H H17 N N N 0 2.456 1.597 -0.74
37 H18 H H18 N N N 0 5.351 1.82 -0.851
38 H19 H H19 N N N 0 4.981 -2.661 1.226
39 H20 H H20 N N N 0 7.177 -1.703 0.778
40 H231 H 1H23 N N N 0 8.791 -0.905 0.405
41 H232 H 2H23 N N N 0 9.752 0.345 -0.177
42 H24 H H24 N N N 0 8.731 2.239 -1.052
43 H261 H 1H26 N N N 0 -8.32 -0.97 -1.718
44 H262 H 2H26 N N N 0 -9.764 -0.424 -1.055
45 H27 H H27 N N N 0 -9.7 0.922 0.836