Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D3P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 22


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 -1.612 -0.449 0.044
2 CA C CA R N N 0 -0.301 0.173 -0.209
3 C C C N N N 0 -0.435 1.663 0.102
4 O O O N N N 0 -1.432 2.192 0.576
5 C1 C C1 N Y N 0 0.807 -0.463 0.561
6 C2 C C2 N Y N 0 1.885 -1.036 -0.112
7 C3 C C3 N Y N 0 2.921 -1.631 0.608
8 O3 O O3 N N N 0 3.973 -2.191 -0.049
9 C4 C C4 N Y N 0 2.878 -1.652 2.002
10 C5 C C5 N Y N 0 1.8 -1.079 2.676
11 O5 O O5 N N N 0 1.758 -1.1 4.036
12 C6 C C6 N Y N 0 0.764 -0.484 1.955
13 OXT O OXT N N Y 0 0.677 2.375 -0.228
14 H H HN1 N N N 0 -1.625 -1.415 0.265
15 H2 H HN2 N N Y 0 -2.419 0.066 -0.215
16 HA H HA N N N 0 -0.103 0.098 -1.295
17 H1 H H2 N N Y 0 1.921 -1.021 -1.199
18 H3 H H3 N N Y 0 4.563 -2.638 0.579
19 H4 H H4 N N N 0 3.686 -2.115 2.564
20 H5 H H5 N N N 0 1.063 -0.505 4.36
21 H6 H H6 N N N 0 -0.076 -0.038 2.483
22 HXT H HXT N N Y 0 0.618 3.34 -0.059