Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D5H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 44


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 F F F1 N N N 0 0.676 2.333 -1.274
2 C9 C C1 N Y N 0 -0.054 1.257 -0.908
3 C8 C C2 N Y N 0 -1.42 1.373 -0.744
4 C7 C C3 N Y N 0 -2.172 0.262 -0.366
5 C5 C C4 N Y N 0 -3.64 0.384 -0.189
6 C4 C C5 N Y N 0 -4.27 1.61 -0.4
7 C3 C C6 N Y N 0 -5.636 1.72 -0.235
8 C2 C C7 N Y N 0 -6.383 0.618 0.139
9 C1 C C8 N Y N 0 -5.763 -0.605 0.351
10 O O O1 N N N 0 -6.501 -1.686 0.718
11 C C C9 N N N 0 -7.909 -1.49 0.868
12 C6 C C10 N Y N 0 -4.393 -0.727 0.182
13 C12 C C11 N Y N 0 -1.544 -0.965 -0.155
14 C11 C C12 N Y N 0 -0.179 -1.077 -0.321
15 C10 C C13 N Y N 0 0.57 0.03 -0.702
16 N N N1 N N N 0 1.952 -0.087 -0.869
17 C13 C C14 N N N 0 2.659 -0.916 -0.076
18 O1 O O2 N N N 0 2.086 -1.617 0.735
19 C14 C C15 N N N 0 4.129 -0.973 -0.192
20 C15 C C16 N N N 0 4.976 -0.128 0.412
21 C19 C C17 N N N 0 4.569 0.989 1.285
22 O3 O O3 N N N 0 3.391 1.251 1.426
23 O2 O O4 N N N 0 5.503 1.718 1.926
24 C18 C C18 N N N 0 4.89 -1.996 -1.003
25 C17 C C19 N N N 0 6.308 -1.403 -1.163
26 C16 C C20 N N N 0 6.406 -0.479 0.073
27 H1 H H1 N N N 0 -1.905 2.324 -0.907
28 H2 H H2 N N N 0 -3.69 2.472 -0.692
29 H3 H H3 N N N 0 -6.123 2.671 -0.398
30 H4 H H4 N N N 0 -7.451 0.71 0.266
31 H5 H H5 N N N 0 -8.091 -0.736 1.634
32 H6 H H6 N N N 0 -8.331 -1.155 -0.079
33 H7 H H7 N N N 0 -8.377 -2.429 1.163
34 H8 H H8 N N N 0 -3.911 -1.68 0.343
35 H9 H H9 N N N 0 -2.125 -1.826 0.137
36 H10 H H10 N N N 0 0.307 -2.027 -0.157
37 H11 H H11 N N N 0 2.403 0.429 -1.556
38 H12 H H12 N N N 0 5.188 2.439 2.487
39 H13 H H13 N N N 0 4.935 -2.947 -0.472
40 H14 H H14 N N N 0 4.422 -2.128 -1.979
41 H15 H H15 N N N 0 7.065 -2.186 -1.124
42 H16 H H16 N N N 0 6.389 -0.831 -2.087
43 H17 H H17 N N N 0 6.971 0.421 -0.17
44 H18 H H18 N N N 0 6.873 -1.007 0.905