Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D6W

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 0.428 0.643 -0.102
2 C5 C C2 N N N 0 -0.641 -0.282 0.49
3 C8 C C3 N N N 0 3.559 0.748 -0.153
4 C10 C C4 N N N 0 2.199 -0.411 1.3
5 C13 C C5 N Y N 0 1.049 3.427 -0.417
6 C15 C C6 N Y N 0 1.104 4.126 -2.707
7 C17 C C7 N Y N 0 2.628 2.445 -1.941
8 C20 C C8 N Y N 0 -3.415 0.062 0.962
9 C21 C C9 N Y N 0 -3.258 -1.172 0.359
10 C22 C C10 N Y N 0 -4.2 -1.598 -0.595
11 C24 C C11 N Y N 0 -5.433 0.536 -0.273
12 C26 C C12 N Y N 0 -4.353 -2.734 -1.374
13 C1 C C13 N N N 0 -0.13 0.628 2.794
14 C2 C C14 N N N 0 0.936 1.546 2.184
15 N9 N N3 N N N 0 3.386 -0.462 0.66
16 C3 C C15 N N N 0 1.519 0.887 0.938
17 N6 N N1 N N N 0 -1.114 0.293 1.756
18 N7 N N2 N N N 0 2.584 1.737 0.365
19 O11 O O1 N N N 0 1.754 -1.263 2.04
20 C12 C C16 N Y N 0 2.086 2.537 -0.666
21 C14 C C17 N Y N 0 0.559 4.217 -1.439
22 C16 C C18 N Y N 0 2.141 3.245 -2.956
23 C18 C C19 N N N 0 -2.428 0.509 1.962
24 O19 O O2 N N N 0 -2.8 1.073 2.974
25 C23 C C20 N Y N 0 -5.33 -0.713 -0.925
26 C25 C C21 N Y N 0 -4.499 0.903 0.633
27 N27 N N4 N Y N 0 -5.458 -2.579 -2.112
28 N28 N N5 N Y N 0 -6.054 -1.344 -1.83
29 C29 C C22 N N N 0 4.354 -1.557 0.761
30 C30 C C23 N N N 0 4.065 -2.583 -0.304
31 O31 O O3 N N N 0 3.141 -2.416 -1.072
32 N32 N N6 N N N 0 4.832 -3.686 -0.403
33 C33 C C24 N N N 0 4.551 -4.684 -1.439
34 H1 H H1 N N N 0 0.865 0.176 -0.985
35 H2 H H2 N N N 0 -0.027 1.593 -0.381
36 H3 H H3 N N N 0 -1.475 -0.369 -0.207
37 H4 H H4 N N N 0 -0.212 -1.268 0.671
38 H5 H H5 N N N 0 3.35 0.53 -1.2
39 H6 H H6 N N N 0 4.574 1.131 -0.046
40 H7 H H7 N N N 0 0.623 3.497 0.573
41 H8 H H8 N N N 0 0.719 4.745 -3.504
42 H9 H H9 N N N 0 3.437 1.757 -2.137
43 H10 H H10 N N N 0 -2.421 -1.803 0.617
44 H11 H H11 N N N 0 -6.254 1.2 -0.501
45 H12 H H12 N N N 0 -3.697 -3.591 -1.383
46 H13 H H13 N N N 0 0.341 -0.285 3.16
47 H14 H H14 N N N 0 -0.627 1.141 3.617
48 H15 H H15 N N N 0 0.482 2.5 1.913
49 H16 H H16 N N N 0 1.73 1.715 2.911
50 H17 H H17 N N N 0 -0.25 4.906 -1.247
51 H18 H H18 N N N 0 2.569 3.183 -3.945
52 H19 H H19 N N N 0 -4.589 1.86 1.125
53 H20 H H20 N N N 0 -5.799 -3.229 -2.746
54 H21 H H21 N N N 0 5.362 -1.165 0.624
55 H22 H H22 N N N 0 4.275 -2.022 1.744
56 H23 H H23 N N N 0 5.571 -3.82 0.211
57 H24 H H24 N N N 0 3.543 -5.076 -1.301
58 H25 H H25 N N N 0 4.63 -4.219 -2.422
59 H26 H H26 N N N 0 5.271 -5.499 -1.363