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PDBeChem : Atoms of Molecule
Molecule : D7P
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 51
| Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
| 1 |
N1' |
N |
N1' |
N |
N |
N |
0 |
-0.571 |
-4.866 |
-0.591 |
| 2 |
N' |
N |
N' |
N |
N |
N |
0 |
-3.588 |
0.496 |
2.175 |
| 3 |
CA' |
C |
CA' |
R |
N |
N |
0 |
-2.987 |
0.214 |
0.865 |
| 4 |
C' |
C |
C' |
N |
N |
N |
0 |
-2.156 |
-1.04 |
0.954 |
| 5 |
O' |
O |
O' |
N |
N |
N |
0 |
-2.344 |
-1.83 |
1.855 |
| 6 |
CB' |
C |
CB' |
N |
N |
N |
0 |
-4.094 |
0.019 |
-0.173 |
| 7 |
CG' |
C |
CG' |
N |
Y |
N |
0 |
-4.849 |
1.312 |
-0.351 |
| 8 |
CD1 |
C |
CD1 |
N |
Y |
N |
0 |
-4.437 |
2.227 |
-1.301 |
| 9 |
CE1 |
C |
CE1 |
N |
Y |
N |
0 |
-5.129 |
3.413 |
-1.464 |
| 10 |
CZ' |
C |
CZ' |
N |
Y |
N |
0 |
-6.233 |
3.682 |
-0.677 |
| 11 |
CE2 |
C |
CE2 |
N |
Y |
N |
0 |
-6.645 |
2.767 |
0.272 |
| 12 |
CB |
C |
CB |
N |
N |
N |
0 |
0.945 |
-2.277 |
-0.584 |
| 13 |
CD2 |
C |
CD2 |
N |
Y |
N |
0 |
-5.956 |
1.579 |
0.433 |
| 14 |
N |
N |
N |
N |
N |
N |
0 |
-1.203 |
-1.284 |
0.032 |
| 15 |
CA |
C |
CA |
R |
N |
N |
0 |
-0.395 |
-2.503 |
0.119 |
| 16 |
C |
C |
C |
N |
N |
N |
0 |
-1.127 |
-3.639 |
-0.548 |
| 17 |
O |
O |
O |
N |
N |
N |
0 |
-2.216 |
-3.449 |
-1.047 |
| 18 |
CG |
C |
CG |
N |
N |
N |
0 |
1.742 |
-1.209 |
0.169 |
| 19 |
CD |
C |
CD |
N |
N |
N |
0 |
3.082 |
-0.983 |
-0.534 |
| 20 |
NE |
N |
NE |
N |
N |
N |
0 |
3.845 |
0.039 |
0.186 |
| 21 |
CZ |
C |
CZ |
N |
N |
N |
0 |
5.09 |
0.412 |
-0.262 |
| 22 |
NH1 |
N |
NH1 |
N |
N |
N |
0 |
5.806 |
1.371 |
0.414 |
| 23 |
NH2 |
N |
NH2 |
N |
N |
N |
0 |
5.592 |
-0.145 |
-1.329 |
| 24 |
NO |
N |
NO |
N |
N |
N |
0 |
7.043 |
1.741 |
-0.032 |
| 25 |
O2 |
O |
O2 |
N |
N |
N |
0 |
7.017 |
3.196 |
-0.184 |
| 26 |
O3 |
O |
O3 |
N |
N |
N |
0 |
7.985 |
1.448 |
1.048 |
| 27 |
H1'1 |
H |
1H1' |
N |
N |
N |
0 |
0.301 |
-5.018 |
-0.193 |
| 28 |
H1'2 |
H |
2H1' |
N |
N |
N |
0 |
-1.042 |
-5.597 |
-1.021 |
| 29 |
HN'1 |
H |
1HN' |
N |
N |
N |
0 |
-4.214 |
1.277 |
2.045 |
| 30 |
HN'2 |
H |
2HN' |
N |
N |
N |
0 |
-4.163 |
-0.3 |
2.408 |
| 31 |
HD1 |
H |
HD1 |
N |
N |
N |
0 |
-3.574 |
2.016 |
-1.916 |
| 32 |
HA' |
H |
HA' |
N |
N |
N |
0 |
-2.353 |
1.049 |
0.568 |
| 33 |
HB'1 |
H |
1HB' |
N |
N |
N |
0 |
-3.652 |
-0.278 |
-1.124 |
| 34 |
HB'2 |
H |
2HB' |
N |
N |
N |
0 |
-4.779 |
-0.757 |
0.168 |
| 35 |
HE1 |
H |
HE1 |
N |
N |
N |
0 |
-4.806 |
4.128 |
-2.206 |
| 36 |
HZ' |
H |
HZ' |
N |
N |
N |
0 |
-6.773 |
4.609 |
-0.804 |
| 37 |
HE2 |
H |
HE2 |
N |
N |
N |
0 |
-7.507 |
2.978 |
0.887 |
| 38 |
HD2 |
H |
HD2 |
N |
N |
N |
0 |
-6.278 |
0.864 |
1.175 |
| 39 |
HN |
H |
HN |
N |
N |
N |
0 |
-1.052 |
-0.652 |
-0.688 |
| 40 |
HA |
H |
HA |
N |
N |
N |
0 |
-0.219 |
-2.749 |
1.166 |
| 41 |
HB1 |
H |
1HB |
N |
N |
N |
0 |
1.51 |
-3.209 |
-0.598 |
| 42 |
HB2 |
H |
2HB |
N |
N |
N |
0 |
0.768 |
-1.944 |
-1.607 |
| 43 |
HG1 |
H |
1HG |
N |
N |
N |
0 |
1.177 |
-0.277 |
0.182 |
| 44 |
HG2 |
H |
2HG |
N |
N |
N |
0 |
1.919 |
-1.542 |
1.191 |
| 45 |
HD1A |
H |
1HD |
N |
N |
N |
0 |
3.647 |
-1.916 |
-0.548 |
| 46 |
HD2A |
H |
2HD |
N |
N |
N |
0 |
2.905 |
-0.651 |
-1.557 |
| 47 |
HNE |
H |
HNE |
N |
N |
N |
0 |
3.472 |
0.453 |
0.98 |
| 48 |
HH1 |
H |
HH1 |
N |
N |
N |
0 |
5.433 |
1.785 |
1.207 |
| 49 |
HH2 |
H |
HH2 |
N |
N |
N |
0 |
6.47 |
0.118 |
-1.646 |
| 50 |
HO2 |
H |
HO2 |
N |
N |
N |
0 |
7.893 |
3.459 |
-0.5 |
| 51 |
HO3 |
H |
HO3 |
N |
N |
N |
0 |
8.861 |
1.709 |
0.734 |
|
Protein Data Bank 
