Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DCZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -0.234 -0.603 1.003
2 C2 C C2 N N N 0 0.076 0.676 1.279
3 N3 N N3 N N N 0 0.313 1.072 2.528
4 C4 C C4 N N N 0 0.248 0.212 3.535
5 C5 C C5 N N N 0 -0.068 -1.137 3.279
6 C6 C C6 N N N 0 -0.312 -1.523 2.005
7 O2 O O2 N N N 0 0.142 1.487 0.37
8 N4 N N4 N N N 0 0.495 0.632 4.822
9 C1' C C1* R N N 0 -0.489 -1.009 -0.381
10 C2' C C2* N N N 0 -1.673 -0.205 -0.952
11 C3' C C3* S N N 0 -1.082 0.514 -2.188
12 C4' C C4* R N N 0 0.165 -0.35 -2.502
13 O4' O O4* N N N 0 0.659 -0.72 -1.195
14 O3' O O3* N N N 0 -2.004 0.494 -3.28
15 C5' C C5* N N N 0 1.209 0.466 -3.266
16 O5' O O5* N N N 0 2.346 -0.352 -3.542
17 H5 H H5 N N N 0 -0.125 -1.85 4.089
18 H6 H H6 N N N 0 -0.562 -2.551 1.784
19 HN41 H 1HN4 N N N 0 0.718 1.56 4.994
20 HN42 H 2HN4 N N N 0 0.444 0.001 5.556
21 H1' H H1* N N N 0 -0.712 -2.075 -0.419
22 H2'1 H 1H2* N N N 0 -2.48 -0.875 -1.25
23 H2'2 H 2H2* N N N 0 -2.03 0.52 -0.222
24 H3' H H3* N N N 0 -0.795 1.536 -1.943
25 H4' H H4* N N N 0 -0.115 -1.238 -3.069
26 HO3' H *HO3 N N N 0 -2.793 0.97 -2.987
27 H5'1 H 1H5* N N N 0 0.779 0.819 -4.203
28 H5'2 H 2H5* N N N 0 1.514 1.321 -2.662
29 HO51 H 1HO5 N N N 0 2.978 0.199 -4.022