Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DFA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C8 C C8 N N N 0 2.044 0.088 0.044
2 O11 O O11 N N N 0 2.377 -0.635 -0.863
3 C5 C C5 N Y N 0 -1.206 0.976 -3.235
4 C4 C C4 N Y N 0 -0.535 1.338 -2.083
5 C3 C C3 N Y N 0 -0.036 0.364 -1.238
6 C2 C C2 N Y N 0 -0.205 -0.972 -1.549
7 C1 C C1 N Y N 0 -0.881 -1.334 -2.7
8 C6 C C6 N Y N 0 -1.38 -0.359 -3.544
9 C10 C C10 N Y N 0 -0.103 0.327 1.221
10 C16 C C16 N Y N 0 -0.691 1.276 2.036
11 C15 C C15 N Y N 0 -1.424 0.88 3.139
12 C14 C C14 N Y N 0 -1.568 -0.463 3.428
13 C13 C C13 N Y N 0 -0.98 -1.412 2.612
14 C12 C C12 N Y N 0 -0.251 -1.017 1.506
15 C11 C C11 N N N 0 0.695 0.758 0.018
16 O1' O O1' N N Y 0 2.877 0.295 1.077
17 H5 H H5 N N N 0 -1.596 1.738 -3.895
18 H4 H H4 N N N 0 -0.399 2.382 -1.841
19 H2 H H2 N N N 0 0.184 -1.733 -0.89
20 H1 H H1 N N N 0 -1.016 -2.378 -2.941
21 H6 H H6 N N N 0 -1.905 -0.642 -4.444
22 H16 H H16 N N N 0 -0.579 2.326 1.81
23 H15 H H15 N N N 0 -1.883 1.622 3.776
24 H14 H H14 N N N 0 -2.14 -0.772 4.29
25 H13 H H13 N N N 0 -1.093 -2.462 2.838
26 H12 H H12 N N N 0 0.207 -1.758 0.869
27 H11 H H11 N N N 0 0.826 1.84 0.037
28 H1' H H1' N N N 0 3.742 -0.135 1.094