Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DJ2

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 1.941 -0.115 -0.273
2 C5 C C2 N Y N 0 2.767 0.943 0.144
3 C6 C C3 N Y N 0 4.159 0.758 0.093
4 C8 C C4 N Y N 0 0.713 1.6 0.368
5 N1 N N1 N Y N 0 4.628 -0.405 -0.347
6 N3 N N2 N Y N 0 2.502 -1.243 -0.698
7 C1' C C5 R N N 0 -0.566 -0.427 -0.42
8 C2 C C6 N Y N 0 3.812 -1.371 -0.729
9 C2' C C7 R N N 0 -0.97 -1.32 0.781
10 C3' C C8 S N N 0 -2.49 -1.502 0.553
11 C4' C C9 R N N 0 -2.879 -0.324 -0.361
12 C5' C C10 N N N 0 -3.956 0.526 0.316
13 N6 N N3 N N N 0 5.022 1.764 0.49
14 N7 N N4 N Y N 0 1.954 1.958 0.523
15 N9 N N5 N Y N 0 0.652 0.327 -0.116
16 NAA N N6 N N N 0 -5.428 2.421 -0.034
17 O2' O O1 N N N 0 -0.292 -2.578 0.731
18 O3' O O2 N N N 0 -2.753 -2.747 -0.097
19 O4' O O3 N N N 0 -1.694 0.461 -0.573
20 O5' O O4 N N N 0 -4.393 1.546 -0.584
21 H1 H H1 N N N 0 -0.143 2.218 0.596
22 H2 H H2 N N N 0 -0.428 -1.03 -1.318
23 H3 H H3 N N N 0 4.235 -2.301 -1.079
24 H4 H H4 N N N 0 -0.775 -0.813 1.725
25 H5 H H5 N N N 0 -3.027 -1.446 1.5
26 H6 H H6 N N N 0 -3.249 -0.701 -1.314
27 H7 H H7 N N N 0 -4.801 -0.106 0.586
28 H8 H H8 N N N 0 -3.544 0.986 1.214
29 H9 H H9 N N N 0 4.668 2.609 0.809
30 H10 H H10 N N N 0 5.981 1.624 0.45
31 H11 H H11 N N N 0 -5.122 2.846 0.828
32 H12 H H12 N N N 0 -5.703 3.123 -0.705
33 H13 H H13 N N N 0 -0.512 -3.172 1.462
34 H14 H H14 N N N 0 -2.474 -3.522 0.41