Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DJJ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 -6.904 -2.624 0.483
2 N4 N N1 N N N 0 -7.697 -3.592 1.055
3 C5 C C2 N N N 0 -6.694 -2.612 -0.911
4 C6 C C3 N N N 0 -5.909 -1.648 -1.448
5 N3 N N2 N N N 0 -6.338 -1.693 1.239
6 C2 C C4 N N N 0 -5.569 -0.751 0.697
7 O2 O O1 N N N 0 -5.06 0.095 1.413
8 N1 N N3 N N N 0 -5.345 -0.716 -0.63
9 C1' C C5 R N N 0 -4.494 0.333 -1.198
10 C2' C C6 N N N 0 -5.109 1.725 -0.935
11 C3' C C7 S N N 0 -3.887 2.629 -0.659
12 O3' O O2 N N N 0 -3.806 3.673 -1.632
13 O4' O O3 N N N 0 -3.216 0.361 -0.526
14 C4' C C8 R N N 0 -2.678 1.676 -0.787
15 C5' C C9 N N N 0 -1.609 2.03 0.248
16 O5' O O4 N N N 0 -0.454 1.215 0.038
17 PA P P1 N N N 0 0.87 1.318 0.948
18 O1A O O5 N N N 0 0.522 0.867 2.454
19 O2A O O6 N N N 0 1.358 2.715 0.952
20 O3A O O7 N N N 0 2.01 0.352 0.349
21 PB P P2 N N N 0 3.598 0.219 0.579
22 O2B O O8 N N N 0 3.866 -0.083 2.003
23 O1B O O9 N N N 0 4.316 1.604 0.18
24 C3B C C10 S N N 0 4.253 -1.127 -0.461
25 CL1 CL CL1 N N N 0 3.926 -0.759 -2.196
26 PG P P3 N N N 0 6.051 -1.277 -0.2
27 O1G O O10 N N N 0 6.342 -1.606 1.349
28 O2G O O11 N N N 0 6.629 -2.466 -1.119
29 O3G O O12 N N N 0 6.711 -0.004 -0.567
30 H1 H H1 N N N 0 -8.112 -4.27 0.498
31 H2 H H2 N N N 0 -7.84 -3.598 2.014
32 H3 H H3 N N N 0 -7.151 -3.361 -1.541
33 H4 H H4 N N N 0 -5.733 -1.618 -2.513
34 H5 H H5 N N N 0 -4.357 0.172 -2.267
35 H6 H H6 N N N 0 -5.652 2.075 -1.814
36 H7 H H7 N N N 0 -5.766 1.695 -0.066
37 H8 H H8 N N N 0 -3.94 3.046 0.347
38 H9 H H9 N N N 0 -4.57 4.267 -1.636
39 H10 H H10 N N N 0 -2.263 1.723 -1.794
40 H11 H H11 N N N 0 -1.336 3.08 0.145
41 H12 H H12 N N N 0 -2.0 1.853 1.25
42 H13 H H13 N N N 0 0.195 -0.04 2.527
43 H14 H H14 N N N 0 4.182 1.865 -0.742
44 H15 H H15 N N N 0 3.767 -2.064 -0.191
45 H16 H H16 N N N 0 5.939 -2.428 1.659
46 H17 H H17 N N N 0 7.582 -2.603 -1.031