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PDBeChem : Atoms of Molecule
Molecule : DJJ
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 46
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C4 |
C |
C1 |
N |
N |
N |
0 |
-6.904 |
-2.624 |
0.483 |
2 |
N4 |
N |
N1 |
N |
N |
N |
0 |
-7.697 |
-3.592 |
1.055 |
3 |
C5 |
C |
C2 |
N |
N |
N |
0 |
-6.694 |
-2.612 |
-0.911 |
4 |
C6 |
C |
C3 |
N |
N |
N |
0 |
-5.909 |
-1.648 |
-1.448 |
5 |
N3 |
N |
N2 |
N |
N |
N |
0 |
-6.338 |
-1.693 |
1.239 |
6 |
C2 |
C |
C4 |
N |
N |
N |
0 |
-5.569 |
-0.751 |
0.697 |
7 |
O2 |
O |
O1 |
N |
N |
N |
0 |
-5.06 |
0.095 |
1.413 |
8 |
N1 |
N |
N3 |
N |
N |
N |
0 |
-5.345 |
-0.716 |
-0.63 |
9 |
C1' |
C |
C5 |
R |
N |
N |
0 |
-4.494 |
0.333 |
-1.198 |
10 |
C2' |
C |
C6 |
N |
N |
N |
0 |
-5.109 |
1.725 |
-0.935 |
11 |
C3' |
C |
C7 |
S |
N |
N |
0 |
-3.887 |
2.629 |
-0.659 |
12 |
O3' |
O |
O2 |
N |
N |
N |
0 |
-3.806 |
3.673 |
-1.632 |
13 |
O4' |
O |
O3 |
N |
N |
N |
0 |
-3.216 |
0.361 |
-0.526 |
14 |
C4' |
C |
C8 |
R |
N |
N |
0 |
-2.678 |
1.676 |
-0.787 |
15 |
C5' |
C |
C9 |
N |
N |
N |
0 |
-1.609 |
2.03 |
0.248 |
16 |
O5' |
O |
O4 |
N |
N |
N |
0 |
-0.454 |
1.215 |
0.038 |
17 |
PA |
P |
P1 |
N |
N |
N |
0 |
0.87 |
1.318 |
0.948 |
18 |
O1A |
O |
O5 |
N |
N |
N |
0 |
0.522 |
0.867 |
2.454 |
19 |
O2A |
O |
O6 |
N |
N |
N |
0 |
1.358 |
2.715 |
0.952 |
20 |
O3A |
O |
O7 |
N |
N |
N |
0 |
2.01 |
0.352 |
0.349 |
21 |
PB |
P |
P2 |
N |
N |
N |
0 |
3.598 |
0.219 |
0.579 |
22 |
O2B |
O |
O8 |
N |
N |
N |
0 |
3.866 |
-0.083 |
2.003 |
23 |
O1B |
O |
O9 |
N |
N |
N |
0 |
4.316 |
1.604 |
0.18 |
24 |
C3B |
C |
C10 |
S |
N |
N |
0 |
4.253 |
-1.127 |
-0.461 |
25 |
CL1 |
CL |
CL1 |
N |
N |
N |
0 |
3.926 |
-0.759 |
-2.196 |
26 |
PG |
P |
P3 |
N |
N |
N |
0 |
6.051 |
-1.277 |
-0.2 |
27 |
O1G |
O |
O10 |
N |
N |
N |
0 |
6.342 |
-1.606 |
1.349 |
28 |
O2G |
O |
O11 |
N |
N |
N |
0 |
6.629 |
-2.466 |
-1.119 |
29 |
O3G |
O |
O12 |
N |
N |
N |
0 |
6.711 |
-0.004 |
-0.567 |
30 |
H1 |
H |
H1 |
N |
N |
N |
0 |
-8.112 |
-4.27 |
0.498 |
31 |
H2 |
H |
H2 |
N |
N |
N |
0 |
-7.84 |
-3.598 |
2.014 |
32 |
H3 |
H |
H3 |
N |
N |
N |
0 |
-7.151 |
-3.361 |
-1.541 |
33 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-5.733 |
-1.618 |
-2.513 |
34 |
H5 |
H |
H5 |
N |
N |
N |
0 |
-4.357 |
0.172 |
-2.267 |
35 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-5.652 |
2.075 |
-1.814 |
36 |
H7 |
H |
H7 |
N |
N |
N |
0 |
-5.766 |
1.695 |
-0.066 |
37 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-3.94 |
3.046 |
0.347 |
38 |
H9 |
H |
H9 |
N |
N |
N |
0 |
-4.57 |
4.267 |
-1.636 |
39 |
H10 |
H |
H10 |
N |
N |
N |
0 |
-2.263 |
1.723 |
-1.794 |
40 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-1.336 |
3.08 |
0.145 |
41 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-2.0 |
1.853 |
1.25 |
42 |
H13 |
H |
H13 |
N |
N |
N |
0 |
0.195 |
-0.04 |
2.527 |
43 |
H14 |
H |
H14 |
N |
N |
N |
0 |
4.182 |
1.865 |
-0.742 |
44 |
H15 |
H |
H15 |
N |
N |
N |
0 |
3.767 |
-2.064 |
-0.191 |
45 |
H16 |
H |
H16 |
N |
N |
N |
0 |
5.939 |
-2.428 |
1.659 |
46 |
H17 |
H |
H17 |
N |
N |
N |
0 |
7.582 |
-2.603 |
-1.031 |
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