Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : DLN

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 37


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C20 C C20 N N N 0 4.287 2.611 -1.242
2 C19 C C19 N N N 0 4.271 1.729 0.007
3 C21 C C21 N N N 0 4.282 2.613 1.256
4 N7 N N7 N Y N 0 3.061 0.902 0.006
5 N8 N N8 N Y N 0 1.75 1.39 0.002
6 C3 C C3 N Y N 0 3.04 -0.461 0.001
7 N2 N N2 N Y N 0 3.977 -1.409 -0.002
8 C1 C C1 N Y N 0 3.645 -2.681 -0.006
9 N6 N N6 N Y N 0 2.389 -3.091 -0.007
10 C5 C C5 N Y N 0 1.384 -2.221 -0.004
11 N10 N N10 N N N 0 0.072 -2.655 -0.005
12 C4 C C4 N Y N 0 1.688 -0.851 0.001
13 C11 C C11 N N N 0 -1.699 0.56 -0.005
14 C12 C C12 N Y N 0 -3.128 0.656 -0.008
15 C13 C C13 N Y N 0 -3.909 -0.503 -0.009
16 C17 C C17 N Y N 0 -3.747 1.909 -0.005
17 C16 C C16 N Y N 0 -5.124 1.997 -0.007
18 C15 C C15 N Y N 0 -5.895 0.849 -0.014
19 C14 C C14 N Y N 0 -5.289 -0.401 -0.012
20 O18 O O18 N N N 0 -6.053 -1.526 -0.013
21 CAI C CAI N Y N 0 0.901 0.385 0.001
22 CAM C CAM N N N 0 -0.528 0.481 -0.002
23 H201 H H201 N N N 0 5.187 3.226 -1.241
24 H202 H H202 N N N 0 4.279 1.981 -2.132
25 H203 H H203 N N N 0 3.407 3.254 -1.245
26 H19 H H19 N N N 0 5.15 1.085 0.01
27 H211 H H211 N N N 0 3.402 3.257 1.254
28 H212 H H212 N N N 0 4.27 1.985 2.147
29 H213 H H213 N N N 0 5.182 3.228 1.257
30 H1 H H1 N N N 0 4.432 -3.422 -0.009
31 H101 H H101 N N N 0 -0.124 -3.605 -0.008
32 H102 H H102 N N N 0 -0.652 -2.01 -0.002
33 H13 H H13 N N N 0 -3.437 -1.474 -0.008
34 H17 H H17 N N N 0 -3.148 2.807 0.001
35 H16 H H16 N N N 0 -5.601 2.966 -0.004
36 H15 H H15 N N N 0 -6.972 0.924 -0.015
37 H18 H H18 N N N 0 -6.275 -1.851 0.87