Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DMP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 80


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.608 -0.249 -0.275
2 C3 C C3 R N N 0 0.005 1.41 0.58
3 C4 C C4 S N N 0 -0.54 1.647 -0.835
4 C5 C C5 S N N 0 -1.279 0.429 -1.369
5 C6 C C6 R N N 0 -0.7 -0.861 -0.814
6 C20 C C20 N N N 0 2.359 1.254 1.423
7 C21 C C21 N Y N 0 2.375 0.431 2.685
8 C22 C C22 N Y N 0 3.035 -0.783 2.71
9 C23 C C23 N Y N 0 3.049 -1.538 3.868
10 C24 C C24 N Y N 0 2.405 -1.078 5.001
11 C25 C C25 N Y N 0 1.74 0.134 4.974
12 C26 C C26 N Y N 0 1.729 0.89 3.817
13 C27 C C27 N N N 0 2.421 -1.9 6.263
14 C30 C C30 N N N 0 -0.972 0.523 1.352
15 C31 C C31 N Y N 0 -1.705 1.353 2.375
16 C32 C C32 N Y N 0 -2.769 2.145 1.987
17 C33 C C33 N Y N 0 -3.441 2.907 2.925
18 C34 C C34 N Y N 0 -3.049 2.876 4.25
19 C35 C C35 N Y N 0 -1.985 2.083 4.638
20 C36 C C36 N Y N 0 -1.316 1.318 3.701
21 C60 C C60 N N N 0 -1.374 -2.051 -1.5
22 C61 C C61 N Y N 0 -2.842 -2.062 -1.16
23 C62 C C62 N Y N 0 -3.756 -1.489 -2.024
24 C63 C C63 N Y N 0 -5.102 -1.499 -1.712
25 C64 C C64 N Y N 0 -5.535 -2.082 -0.536
26 C65 C C65 N Y N 0 -4.621 -2.656 0.327
27 C66 C C66 N Y N 0 -3.275 -2.65 0.013
28 C70 C C70 N N N 0 1.254 -1.746 -2.15
29 C71 C C71 N Y N 0 1.471 -0.877 -3.362
30 C72 C C72 N Y N 0 2.691 -0.259 -3.561
31 C73 C C73 N Y N 0 2.89 0.537 -4.673
32 C74 C C74 N Y N 0 1.868 0.715 -5.587
33 C75 C C75 N Y N 0 0.648 0.095 -5.389
34 C76 C C76 N Y N 0 0.451 -0.704 -4.279
35 C77 C C77 N N N 0 2.084 1.584 -6.799
36 N2 N N2 N N N 0 1.31 0.758 0.529
37 N7 N N7 N N N 0 0.742 -0.928 -1.048
38 O1 O O1 N N N 0 2.771 -0.599 -0.313
39 O4 O O4 N N N 0 -1.434 2.761 -0.808
40 O5 O O5 N N N 0 -1.177 0.41 -2.794
41 O27 O O27 N N N 0 3.615 -1.623 6.998
42 O77 O O77 N N N 0 2.585 0.786 -7.874
43 H3 H H3 N N N 0 0.102 2.368 1.092
44 H4 H H4 N N N 0 0.291 1.877 -1.501
45 H5 H H5 N N N 0 -2.329 0.499 -1.088
46 H6 H H6 N N N 0 -0.892 -0.909 0.257
47 H201 H 1H20 N N N 0 2.162 2.297 1.671
48 H202 H 2H20 N N N 0 3.327 1.176 0.926
49 H22 H H22 N N N 0 3.539 -1.142 1.825
50 H23 H H23 N N N 0 3.565 -2.486 3.888
51 H25 H H25 N N N 0 1.236 0.492 5.859
52 H26 H H26 N N N 0 1.213 1.839 3.798
53 H271 H 1H27 N N N 0 2.389 -2.959 6.007
54 H272 H 2H27 N N N 0 1.553 -1.648 6.873
55 H301 H 1H30 N N N 0 -1.69 0.083 0.659
56 H302 H 2H30 N N N 0 -0.421 -0.271 1.857
57 H32 H H32 N N N 0 -3.075 2.17 0.952
58 H33 H H33 N N N 0 -4.272 3.527 2.622
59 H34 H H34 N N N 0 -3.573 3.472 4.982
60 H35 H H35 N N N 0 -1.678 2.059 5.673
61 H36 H H36 N N N 0 -0.485 0.698 4.003
62 H601 H 1H60 N N N 0 -1.251 -1.965 -2.58
63 H602 H 2H60 N N N 0 -0.914 -2.977 -1.155
64 H62 H H62 N N N 0 -3.418 -1.034 -2.943
65 H63 H H63 N N N 0 -5.817 -1.051 -2.387
66 H64 H H64 N N N 0 -6.587 -2.09 -0.292
67 H65 H H65 N N N 0 -4.959 -3.111 1.246
68 H66 H H66 N N N 0 -2.561 -3.098 0.688
69 H701 H 1H70 N N N 0 2.2 -2.201 -1.855
70 H702 H 2H70 N N N 0 0.533 -2.528 -2.387
71 H72 H H72 N N N 0 3.489 -0.398 -2.847
72 H73 H H73 N N N 0 3.843 1.02 -4.827
73 H75 H H75 N N N 0 -0.149 0.234 -6.103
74 H76 H H76 N N N 0 -0.501 -1.187 -4.125
75 H771 H 1H77 N N N 0 1.139 2.038 -7.093
76 H772 H 2H77 N N N 0 2.805 2.366 -6.561
77 HO4 H HO4 N N N 0 -1.758 2.882 -1.711
78 HO5 H HO5 N N N 0 -1.581 1.228 -3.114
79 HO27 H 7HO2 N N N 0 3.585 -2.168 7.796
80 HO77 H 7HO7 N N N 0 2.709 1.379 -8.627