Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DO6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C3 C C1 N Y N 0 2.502 -1.504 0.201
2 C5 C C2 N Y N 0 1.906 0.707 -0.58
3 C12 C C3 N N N 0 2.534 3.272 -1.148
4 C9 C C4 N N N 0 6.329 0.451 -0.94
5 C13 C C5 N N N 0 0.14 -1.042 -0.436
6 C15 C C6 N Y N 0 -0.956 -0.206 0.076
7 C16 C C7 N Y N 0 -2.404 -0.407 -0.137
8 C17 C C8 N Y N 0 -3.031 0.645 0.547
9 C1 C C9 N Y N 0 4.176 0.213 0.04
10 C2 C C10 N Y N 0 3.814 -1.095 0.35
11 C4 C C11 N Y N 0 1.54 -0.605 -0.269
12 C6 C C12 N Y N 0 3.218 1.112 -0.423
13 O7 O O1 N N N 0 5.466 0.613 0.188
14 O8 O O2 N N N 0 4.751 -1.97 0.802
15 C10 C C13 N N N 0 4.29 -3.258 1.216
16 O11 O O3 N N N 0 3.576 2.389 -0.726
17 O14 O O4 N N N 0 -0.107 -2.093 -0.997
18 O18 O O5 N Y N 0 -2.065 1.399 1.112
19 C19 C C14 N Y N 0 -0.848 0.91 0.849
20 C20 C C15 N Y N 0 -3.162 -1.352 -0.821
21 C21 C C16 N Y N 0 -4.537 -1.254 -0.826
22 C22 C C17 N Y N 0 -5.166 -0.215 -0.151
23 C23 C C18 N Y N 0 -4.42 0.733 0.535
24 O24 O O6 N N N 0 -6.524 -0.127 -0.162
25 C25 C C19 N N N 0 -7.234 -1.134 -0.885
26 O26 O O7 N N N 0 -5.045 1.746 1.194
27 C27 C C20 N N N 0 0.449 1.506 1.332
28 H1 H H1 N N N 0 2.221 -2.519 0.442
29 H2 H H2 N N N 0 1.165 1.403 -0.943
30 H3 H H3 N N N 0 1.766 3.323 -0.375
31 H4 H H4 N N N 0 2.946 4.266 -1.316
32 H5 H H5 N N N 0 2.094 2.899 -2.072
33 H6 H H6 N N N 0 7.327 0.809 -0.688
34 H12 H H12 N N N 0 -2.674 -2.16 -1.346
35 H7 H H7 N N N 0 6.379 -0.604 -1.211
36 H8 H H8 N N N 0 5.94 1.024 -1.781
37 H9 H H9 N N N 0 5.123 -3.826 1.632
38 H10 H H10 N N N 0 3.516 -3.141 1.974
39 H11 H H11 N N N 0 3.88 -3.79 0.357
40 H13 H H13 N N N 0 -5.127 -1.987 -1.356
41 H14 H H14 N N N 0 -7.007 -2.113 -0.462
42 H15 H H15 N N N 0 -8.305 -0.947 -0.813
43 H16 H H16 N N N 0 -6.93 -1.112 -1.932
44 H17 H H17 N N N 0 -5.188 2.536 0.655
45 H18 H H18 N N N 0 0.828 2.205 0.586
46 H19 H H19 N N N 0 0.279 2.034 2.271
47 H20 H H20 N N N 0 1.178 0.711 1.49