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PDBeChem : Atoms of Molecule
Molecule : DO6
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 47
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C3 |
C |
C1 |
N |
Y |
N |
0 |
2.502 |
-1.504 |
0.201 |
2 |
C5 |
C |
C2 |
N |
Y |
N |
0 |
1.906 |
0.707 |
-0.58 |
3 |
C12 |
C |
C3 |
N |
N |
N |
0 |
2.534 |
3.272 |
-1.148 |
4 |
C9 |
C |
C4 |
N |
N |
N |
0 |
6.329 |
0.451 |
-0.94 |
5 |
C13 |
C |
C5 |
N |
N |
N |
0 |
0.14 |
-1.042 |
-0.436 |
6 |
C15 |
C |
C6 |
N |
Y |
N |
0 |
-0.956 |
-0.206 |
0.076 |
7 |
C16 |
C |
C7 |
N |
Y |
N |
0 |
-2.404 |
-0.407 |
-0.137 |
8 |
C17 |
C |
C8 |
N |
Y |
N |
0 |
-3.031 |
0.645 |
0.547 |
9 |
C1 |
C |
C9 |
N |
Y |
N |
0 |
4.176 |
0.213 |
0.04 |
10 |
C2 |
C |
C10 |
N |
Y |
N |
0 |
3.814 |
-1.095 |
0.35 |
11 |
C4 |
C |
C11 |
N |
Y |
N |
0 |
1.54 |
-0.605 |
-0.269 |
12 |
C6 |
C |
C12 |
N |
Y |
N |
0 |
3.218 |
1.112 |
-0.423 |
13 |
O7 |
O |
O1 |
N |
N |
N |
0 |
5.466 |
0.613 |
0.188 |
14 |
O8 |
O |
O2 |
N |
N |
N |
0 |
4.751 |
-1.97 |
0.802 |
15 |
C10 |
C |
C13 |
N |
N |
N |
0 |
4.29 |
-3.258 |
1.216 |
16 |
O11 |
O |
O3 |
N |
N |
N |
0 |
3.576 |
2.389 |
-0.726 |
17 |
O14 |
O |
O4 |
N |
N |
N |
0 |
-0.107 |
-2.093 |
-0.997 |
18 |
O18 |
O |
O5 |
N |
Y |
N |
0 |
-2.065 |
1.399 |
1.112 |
19 |
C19 |
C |
C14 |
N |
Y |
N |
0 |
-0.848 |
0.91 |
0.849 |
20 |
C20 |
C |
C15 |
N |
Y |
N |
0 |
-3.162 |
-1.352 |
-0.821 |
21 |
C21 |
C |
C16 |
N |
Y |
N |
0 |
-4.537 |
-1.254 |
-0.826 |
22 |
C22 |
C |
C17 |
N |
Y |
N |
0 |
-5.166 |
-0.215 |
-0.151 |
23 |
C23 |
C |
C18 |
N |
Y |
N |
0 |
-4.42 |
0.733 |
0.535 |
24 |
O24 |
O |
O6 |
N |
N |
N |
0 |
-6.524 |
-0.127 |
-0.162 |
25 |
C25 |
C |
C19 |
N |
N |
N |
0 |
-7.234 |
-1.134 |
-0.885 |
26 |
O26 |
O |
O7 |
N |
N |
N |
0 |
-5.045 |
1.746 |
1.194 |
27 |
C27 |
C |
C20 |
N |
N |
N |
0 |
0.449 |
1.506 |
1.332 |
28 |
H1 |
H |
H1 |
N |
N |
N |
0 |
2.221 |
-2.519 |
0.442 |
29 |
H2 |
H |
H2 |
N |
N |
N |
0 |
1.165 |
1.403 |
-0.943 |
30 |
H3 |
H |
H3 |
N |
N |
N |
0 |
1.766 |
3.323 |
-0.375 |
31 |
H4 |
H |
H4 |
N |
N |
N |
0 |
2.946 |
4.266 |
-1.316 |
32 |
H5 |
H |
H5 |
N |
N |
N |
0 |
2.094 |
2.899 |
-2.072 |
33 |
H6 |
H |
H6 |
N |
N |
N |
0 |
7.327 |
0.809 |
-0.688 |
34 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-2.674 |
-2.16 |
-1.346 |
35 |
H7 |
H |
H7 |
N |
N |
N |
0 |
6.379 |
-0.604 |
-1.211 |
36 |
H8 |
H |
H8 |
N |
N |
N |
0 |
5.94 |
1.024 |
-1.781 |
37 |
H9 |
H |
H9 |
N |
N |
N |
0 |
5.123 |
-3.826 |
1.632 |
38 |
H10 |
H |
H10 |
N |
N |
N |
0 |
3.516 |
-3.141 |
1.974 |
39 |
H11 |
H |
H11 |
N |
N |
N |
0 |
3.88 |
-3.79 |
0.357 |
40 |
H13 |
H |
H13 |
N |
N |
N |
0 |
-5.127 |
-1.987 |
-1.356 |
41 |
H14 |
H |
H14 |
N |
N |
N |
0 |
-7.007 |
-2.113 |
-0.462 |
42 |
H15 |
H |
H15 |
N |
N |
N |
0 |
-8.305 |
-0.947 |
-0.813 |
43 |
H16 |
H |
H16 |
N |
N |
N |
0 |
-6.93 |
-1.112 |
-1.932 |
44 |
H17 |
H |
H17 |
N |
N |
N |
0 |
-5.188 |
2.536 |
0.655 |
45 |
H18 |
H |
H18 |
N |
N |
N |
0 |
0.828 |
2.205 |
0.586 |
46 |
H19 |
H |
H19 |
N |
N |
N |
0 |
0.279 |
2.034 |
2.271 |
47 |
H20 |
H |
H20 |
N |
N |
N |
0 |
1.178 |
0.711 |
1.49 |
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