Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DRB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 116


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 RU RU RU N N N 2 -5.096 -0.2 0.034
2 N2 N N2 N N N 0 -6.02 0.745 -1.512
3 C3 C C3 N N N 0 -5.47 1.327 -2.654
4 C4 C C4 N N N 0 -6.249 1.908 -3.575
5 C5 C C5 N N N 0 -7.696 1.934 -3.38
6 C6 C C6 N N N 0 -8.233 1.375 -2.275
7 C7 C C7 N N N 0 -7.396 0.753 -1.292
8 C8 C C8 N N N 0 -7.888 0.162 -0.142
9 C9 C C9 N N N 0 -9.284 0.115 0.182
10 C10 C C10 N N N 0 -9.705 -0.484 1.316
11 C11 C C11 N N N 0 -8.732 -1.088 2.222
12 C12 C C12 N N N 0 -7.43 -1.039 1.917
13 N13 N N13 N N N 0 -6.988 -0.422 0.747
14 N14 N N14 N N N 0 -4.797 1.552 1.022
15 C15 C C15 N N N 0 -5.635 2.231 1.906
16 C16 C C16 N N N 0 -5.256 3.383 2.47
17 C17 C C17 N N N 0 -3.943 3.94 2.155
18 C18 C C18 N N N 0 -3.128 3.29 1.298
19 C19 C C19 N N N 0 -3.539 2.055 0.694
20 C20 C C20 N N N 0 -2.749 1.347 -0.191
21 C21 C C21 N N N 0 -1.437 1.767 -0.59
22 C22 C C22 N N N 0 -0.718 1.036 -1.469
23 C23 C C23 N N N 0 -1.28 -0.194 -2.02
24 C24 C C24 N N N 0 -2.501 -0.587 -1.641
25 N25 N N25 N N N 0 -3.244 0.162 -0.729
26 N26 N N26 N N N 0 -4.316 -1.269 1.58
27 C27 C C27 N N N 0 -3.885 -0.831 2.831
28 C28 C C28 N N N 0 -3.396 -1.691 3.733
29 C29 C C29 N N N 0 -3.316 -3.11 3.398
30 C30 C C30 N N N 0 -3.73 -3.54 2.187
31 C31 C C31 N N N 0 -4.249 -2.614 1.222
32 C32 C C32 N N N 0 -4.679 -2.988 -0.036
33 C33 C C33 N N N 0 -4.643 -4.342 -0.51
34 C34 C C34 N N N 0 -5.078 -4.648 -1.75
35 C35 C C35 N N N 0 -5.593 -3.593 -2.62
36 C36 C C36 N N N 0 -5.624 -2.331 -2.175
37 N37 N N37 N N N 0 -5.173 -2.009 -0.896
38 C38 C C38 N N N 0 -3.499 5.235 2.783
39 C39 C C39 N N N 0 0.659 1.489 -1.879
40 C40 C C40 N N N 0 1.705 0.794 -1.005
41 C41 C C41 N N N 0 3.104 1.254 -1.421
42 C45 C C45 N N N 0 7.994 0.784 -0.505
43 C42 C C42 N N N 0 4.15 0.559 -0.547
44 C43 C C43 N N N 0 5.549 1.019 -0.963
45 C44 C C44 N N N 0 6.595 0.324 -0.089
46 N49 N N49 N N N 0 11.503 0.059 0.595
47 C46 C C46 N N N 0 9.04 0.089 0.369
48 O47 O O47 N N N 0 10.55 1.342 -0.944
49 C48 C C48 N N N 0 10.418 0.542 -0.041
50 C50 C C50 N N N 0 14.343 -1.98 0.628
51 C51 C C51 N N N 0 13.854 -1.128 1.8
52 C52 C C52 N N N 0 13.803 0.342 1.377
53 C53 C C53 N N N 0 12.842 0.499 0.196
54 C54 C C54 N N N 0 13.331 -0.354 -0.976
55 C55 C C55 N N N 0 14.73 0.106 -1.393
56 C56 C C56 N N N 0 15.691 -0.051 -0.212
57 C57 C C57 N N N 0 15.742 -1.52 0.211
58 C58 C C58 N N N 0 13.383 -1.823 -0.553
59 C59 C C59 N N N 0 15.202 0.801 0.96
60 H3 H H3 N N N 0 -4.398 1.309 -2.797
61 H4 H H4 N N N 0 -5.81 2.352 -4.455
62 H10 H H10 N N N 0 -10.758 -0.516 1.552
63 H5 H H5 N N N 0 -8.334 2.398 -4.117
64 H6 H H6 N N N 0 -9.305 1.396 -2.131
65 H9 H H9 N N N 0 -10.005 0.563 -0.487
66 H11 H H11 N N N 0 -9.059 -1.571 3.13
67 H12 H H12 N N N 0 -6.708 -1.487 2.588
68 H15 H H15 N N N 0 -6.608 1.818 2.14
69 H18 H H18 N N N 0 -2.156 3.703 1.065
70 H16 H H16 N N N 0 -5.915 3.897 3.153
71 H21 H H21 N N N 0 -1.019 2.678 -0.183
72 H23 H H23 N N N 0 -0.716 -0.782 -2.728
73 H24 H H24 N N N 0 -2.92 -1.497 -2.048
74 H27 H H27 N N N 0 -3.945 0.222 3.077
75 H28 H H28 N N N 0 -3.065 -1.339 4.697
76 H29 H H29 N N N 0 -2.927 -3.815 4.117
77 H30 H H30 N N N 0 -3.669 -4.591 1.942
78 H33 H H33 N N N 0 -4.263 -5.124 0.132
79 H34 H H34 N N N 0 -5.046 -5.669 -2.098
80 H35 H H35 N N N 0 -5.943 -3.828 -3.612
81 H36 H H36 N N N 0 -6.005 -1.548 -2.818
82 H383 H 3H38 N N N 0 -2.414 5.234 2.89
83 H382 H 2H38 N N N 0 -3.96 5.339 3.766
84 H381 H 1H38 N N N 0 -3.801 6.069 2.15
85 H392 H 2H39 N N N 0 0.739 2.568 -1.752
86 H391 H 1H39 N N N 0 0.83 1.231 -2.924
87 H402 H 2H40 N N N 0 1.625 -0.286 -1.131
88 H401 H 1H40 N N N 0 1.534 1.052 0.041
89 H412 H 2H41 N N N 0 3.184 2.334 -1.295
90 H411 H 1H41 N N N 0 3.275 0.996 -2.466
91 H422 H 2H42 N N N 0 4.07 -0.52 -0.673
92 H442 H 2H44 N N N 0 6.515 -0.755 -0.215
93 H421 H 1H42 N N N 0 3.979 0.817 0.498
94 H432 H 2H43 N N N 0 5.629 2.099 -0.837
95 H431 H 1H43 N N N 0 5.72 0.761 -2.008
96 H441 H 1H44 N N N 0 6.424 0.582 0.956
97 H452 H 2H45 N N N 0 8.074 1.864 -0.379
98 H451 H 1H45 N N N 0 8.165 0.527 -1.551
99 H462 H 2H46 N N N 0 8.96 -0.99 0.243
100 H461 H 1H46 N N N 0 8.869 0.347 1.414
101 H49 H H49 N N N 0 11.398 -0.581 1.317
102 H50 H H50 N N N 0 14.38 -3.027 0.93
103 H512 H 2H51 N N N 0 12.858 -1.455 2.097
104 H511 H 1H51 N N N 0 14.539 -1.24 2.641
105 H52 H H52 N N N 0 13.455 0.949 2.212
106 H53 H H53 N N N 0 12.806 1.546 -0.106
107 H54 H H54 N N N 0 12.647 -0.242 -1.817
108 H552 H 2H55 N N N 0 15.078 -0.501 -2.228
109 H551 H 1H55 N N N 0 14.694 1.153 -1.695
110 H56 H H56 N N N 0 16.687 0.276 -0.509
111 H572 H 2H57 N N N 0 16.09 -2.128 -0.624
112 H571 H 1H57 N N N 0 16.426 -1.632 1.052
113 H582 H 2H58 N N N 0 12.386 -2.15 -0.256
114 H581 H 1H58 N N N 0 13.731 -2.43 -1.388
115 H592 H 2H59 N N N 0 15.886 0.689 1.801
116 H591 H 1H59 N N N 0 15.165 1.848 0.658