Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DSB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 30


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.634 -4.065 -2.835
2 O2 O O2 N N N 0 2.068 -4.559 -1.804
3 C2 C C2 N N N 0 1.208 -2.625 -3.017
4 C3 C C3 N N N 0 1.278 -1.808 -1.732
5 C5 C C5 N N N 0 0.643 0.506 -0.729
6 O1 O O1 N N N 0 1.471 -4.777 -3.982
7 C6 C C6 N N N 0 0.127 1.887 -1.113
8 C8 C C8 N N N 0 -0.405 4.267 -0.291
9 C9 C C9 N N N 0 -0.493 5.195 0.918
10 C10 C C10 N N N 0 -0.857 6.61 0.537
11 O11 O O11 N N N 0 -0.852 7.404 1.639
12 O12 O O12 N N N 0 -1.131 7.01 -0.585
13 C7 C C7 N N N 0 0.017 2.847 0.065
14 C4 C C4 N N N 0 0.783 -0.389 -1.945
15 O4 O O4 N N Y 0 0.543 0.034 -3.077
16 O7 O O7 N N Y 0 0.25 2.502 1.222
17 H21 H 1H2 N N N 0 1.824 -2.172 -3.802
18 H22 H 2H2 N N N 0 0.165 -2.649 -3.356
19 H31 H 1H3 N N N 0 2.275 -1.788 -1.281
20 H32 H 2H3 N N N 0 0.612 -2.256 -0.983
21 H51 H 1H5 N N N 0 1.627 0.601 -0.257
22 H52 H 2H5 N N N 0 0.0 0.0 0.0
23 H11 H 1H1 N N N 0 1.728 -5.722 -3.923
24 H61 H 1H6 N N N 0 -0.855 1.824 -1.592
25 H62 H 2H6 N N N 0 0.83 2.34 -1.821
26 H81 H 1H8 N N N 0 0.353 4.659 -0.979
27 H82 H 2H8 N N N 0 -1.362 4.221 -0.822
28 H91 H 1H9 N N N 0 -1.223 4.827 1.647
29 H92 H 2H9 N N N 0 0.493 5.233 1.396
30 H111 H 1H11 N N N 0 -1.094 8.33 1.424