Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DU6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -1.326 -0.961 1.21
2 C13 C C2 N N N 0 0.897 2.707 0.746
3 C20 C C3 N Y N 0 3.754 -1.079 0.63
4 C21 C C4 N Y N 0 5.09 -0.781 0.775
5 C22 C C5 N Y N 0 5.821 -0.303 -0.316
6 C24 C C6 N Y N 0 3.853 -0.423 -1.689
7 C02 C C7 N Y N 0 -3.593 0.893 -0.388
8 C03 C C8 N Y N 0 -4.7 1.338 -0.997
9 C05 C C9 N Y N 0 -4.739 -1.105 -0.1
10 C07 C C10 N Y N 0 -3.385 -2.43 0.936
11 C08 C C11 N Y N 0 -2.731 -1.269 0.763
12 C09 C C12 N N N 0 -2.445 1.737 -0.238
13 C11 C C13 N N N 0 -1.505 2.428 -0.116
14 C12 C C14 N N N 0 -0.325 3.296 0.038
15 C14 C C15 N N N 0 0.034 3.754 1.453
16 C16 C C16 N N N 0 0.923 -0.991 0.273
17 C19 C C17 N Y N 0 3.131 -0.904 -0.601
18 C23 C C18 N Y N 0 5.191 -0.128 -1.552
19 C25 C C19 N N N 0 7.211 0.009 -0.169
20 N01 N N1 N Y N 0 -3.591 -0.403 0.096
21 N06 N N2 N Y N 0 -4.609 -2.31 0.403
22 N15 N N3 N N N 0 -0.397 -1.201 0.103
23 N18 N N4 N N N 0 1.777 -1.212 -0.746
24 N26 N N5 N N N 0 8.313 0.256 -0.052
25 O17 O O1 N N N 0 1.344 -0.603 1.345
26 S04 S S1 N Y N 0 -5.842 -0.017 -0.956
27 H1 H H1 N N N 0 -1.263 0.083 1.518
28 H2 H H2 N N N 0 -1.063 -1.604 2.05
29 H3 H H3 N N N 0 0.828 1.677 1.097
30 H4 H H4 N N N 0 1.88 3.019 0.394
31 H5 H H5 N N N 0 3.19 -1.454 1.471
32 H6 H H6 N N N 0 5.574 -0.918 1.731
33 H7 H H7 N N N 0 3.366 -0.288 -2.643
34 H8 H H8 N N N 0 -4.863 2.317 -1.423
35 H9 H H9 N N N 0 -2.99 -3.31 1.421
36 H10 H H10 N N N 0 -0.146 3.995 -0.779
37 H11 H H11 N N N 0 -0.602 3.414 2.27
38 H12 H H12 N N N 0 0.451 4.755 1.567
39 H13 H H13 N N N 0 5.752 0.243 -2.397
40 H14 H H14 N N N 0 -0.733 -1.511 -0.753
41 H15 H H15 N N N 0 1.451 -1.585 -1.58