Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DYV

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N Y N 0 4.642 -1.949 -2.754
2 C3 C C2 N Y N 0 4.406 -1.278 -1.57
3 C4 C C3 N Y N 0 3.24 -1.521 -0.86
4 C5 C C4 N Y N 0 2.308 -2.45 -1.353
5 C6 C C5 N Y N 0 2.559 -3.119 -2.549
6 C7 C C6 N N N 0 1.076 -2.693 -0.581
7 C8 C C7 N Y N 0 1.822 -1.11 1.028
8 C11 C C8 N Y N 0 6.1 -0.154 0.601
9 C12 C C9 N Y N 0 7.321 0.398 0.276
10 C13 C C10 N Y N 0 7.439 1.762 0.071
11 C14 C C11 N Y N 0 6.33 2.585 0.19
12 C17 C C12 N N N 0 -0.335 -2.247 1.349
13 C18 C C13 N Y N 0 -1.437 -1.36 0.831
14 C19 C C14 N Y N 0 -1.162 -0.419 -0.146
15 C20 C C15 N Y N 0 -2.167 0.396 -0.625
16 C25 C C19 N N N 0 -6.293 -0.551 -0.011
17 C21 C C16 N Y N 0 -3.464 0.27 -0.124
18 C22 C C17 N Y N 0 -3.735 -0.681 0.861
19 C23 C C18 N Y N 0 -2.722 -1.494 1.329
20 C26 C C20 N N N 0 -7.624 -0.859 -0.742
21 C27 C C21 N N N 0 -8.226 0.562 -0.905
22 C28 C C22 S N N 0 -6.98 1.44 -1.148
23 C1 C C23 N Y N 0 3.724 -2.865 -3.241
24 N1 N N1 N N N 0 0.885 -2.016 0.571
25 N2 N N2 N Y N 0 2.972 -0.865 0.333
26 C9 C C24 N Y N 0 3.662 0.073 1.061
27 N3 N N3 N Y N 0 2.934 0.347 2.12
28 N4 N N4 N Y N 0 1.852 -0.348 2.101
29 O1 O O1 N N N 0 6.453 3.925 -0.008
30 C10 C C25 N Y N 0 4.974 0.663 0.719
31 C15 C C26 N N N 0 7.753 4.414 -0.341
32 C16 C C27 N Y N 0 5.093 2.042 0.517
33 O2 O O2 N N N 0 4.004 2.846 0.635
34 CL1 CL CL1 N N N 0 -3.058 -2.683 2.549
35 C24 C C28 N N N 0 -4.544 1.14 -0.633
36 O3 O O3 N N N 0 -4.28 2.239 -1.081
37 N5 N N5 N N N 0 -5.823 0.716 -0.601
38 C29 C C29 N N N 0 -7.14 2.763 -0.444
39 O4 O O4 N N N 0 -8.148 3.583 -0.779
40 O5 O O5 N N N 0 -6.362 3.084 0.422
41 O6 O O6 N N N 0 0.245 -3.489 -0.976
42 H1 H H1 N N N 0 5.549 -1.754 -3.307
43 H2 H H2 N N N 0 5.127 -0.566 -1.198
44 H3 H H3 N N N 0 1.845 -3.834 -2.931
45 H4 H H4 N N N 0 6.014 -1.219 0.76
46 H5 H H5 N N N 0 8.19 -0.236 0.182
47 H6 H H6 N N N 0 8.399 2.186 -0.183
48 H7 H H7 N N N 0 -0.146 -2.016 2.398
49 H8 H H8 N N N 0 -0.634 -3.291 1.255
50 H9 H H9 N N N 0 -0.159 -0.322 -0.533
51 H10 H H10 N N N 0 -1.951 1.13 -1.387
52 H11 H H11 N N N 0 -4.736 -0.784 1.253
53 H12 H H12 N N N 0 -6.467 -0.43 1.058
54 H13 H H13 N N N 0 -5.57 -1.346 -0.19
55 H14 H H14 N N N 0 -7.439 -1.318 -1.713
56 H15 H H15 N N N 0 -8.269 -1.49 -0.131
57 H16 H H16 N N N 0 -8.898 0.6 -1.763
58 H17 H H17 N N N 0 -8.745 0.867 0.004
59 H18 H H18 N N N 0 -6.844 1.603 -2.217
60 H19 H H19 N N N 0 3.92 -3.379 -4.17
61 H20 H H20 N N N 0 8.45 4.172 0.462
62 H21 H H21 N N N 0 8.09 3.949 -1.268
63 H24 H H24 N N N 0 -8.21 4.421 -0.3
64 H22 H H22 N N N 0 7.712 5.496 -0.472
65 H23 H H23 N N N 0 3.512 2.965 -0.189