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PDBeChem : Atoms of Molecule
Molecule : DYV
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 65
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C2 |
C |
C1 |
N |
Y |
N |
0 |
4.642 |
-1.949 |
-2.754 |
2 |
C3 |
C |
C2 |
N |
Y |
N |
0 |
4.406 |
-1.278 |
-1.57 |
3 |
C4 |
C |
C3 |
N |
Y |
N |
0 |
3.24 |
-1.521 |
-0.86 |
4 |
C5 |
C |
C4 |
N |
Y |
N |
0 |
2.308 |
-2.45 |
-1.353 |
5 |
C6 |
C |
C5 |
N |
Y |
N |
0 |
2.559 |
-3.119 |
-2.549 |
6 |
C7 |
C |
C6 |
N |
N |
N |
0 |
1.076 |
-2.693 |
-0.581 |
7 |
C8 |
C |
C7 |
N |
Y |
N |
0 |
1.822 |
-1.11 |
1.028 |
8 |
C11 |
C |
C8 |
N |
Y |
N |
0 |
6.1 |
-0.154 |
0.601 |
9 |
C12 |
C |
C9 |
N |
Y |
N |
0 |
7.321 |
0.398 |
0.276 |
10 |
C13 |
C |
C10 |
N |
Y |
N |
0 |
7.439 |
1.762 |
0.071 |
11 |
C14 |
C |
C11 |
N |
Y |
N |
0 |
6.33 |
2.585 |
0.19 |
12 |
C17 |
C |
C12 |
N |
N |
N |
0 |
-0.335 |
-2.247 |
1.349 |
13 |
C18 |
C |
C13 |
N |
Y |
N |
0 |
-1.437 |
-1.36 |
0.831 |
14 |
C19 |
C |
C14 |
N |
Y |
N |
0 |
-1.162 |
-0.419 |
-0.146 |
15 |
C20 |
C |
C15 |
N |
Y |
N |
0 |
-2.167 |
0.396 |
-0.625 |
16 |
C25 |
C |
C19 |
N |
N |
N |
0 |
-6.293 |
-0.551 |
-0.011 |
17 |
C21 |
C |
C16 |
N |
Y |
N |
0 |
-3.464 |
0.27 |
-0.124 |
18 |
C22 |
C |
C17 |
N |
Y |
N |
0 |
-3.735 |
-0.681 |
0.861 |
19 |
C23 |
C |
C18 |
N |
Y |
N |
0 |
-2.722 |
-1.494 |
1.329 |
20 |
C26 |
C |
C20 |
N |
N |
N |
0 |
-7.624 |
-0.859 |
-0.742 |
21 |
C27 |
C |
C21 |
N |
N |
N |
0 |
-8.226 |
0.562 |
-0.905 |
22 |
C28 |
C |
C22 |
S |
N |
N |
0 |
-6.98 |
1.44 |
-1.148 |
23 |
C1 |
C |
C23 |
N |
Y |
N |
0 |
3.724 |
-2.865 |
-3.241 |
24 |
N1 |
N |
N1 |
N |
N |
N |
0 |
0.885 |
-2.016 |
0.571 |
25 |
N2 |
N |
N2 |
N |
Y |
N |
0 |
2.972 |
-0.865 |
0.333 |
26 |
C9 |
C |
C24 |
N |
Y |
N |
0 |
3.662 |
0.073 |
1.061 |
27 |
N3 |
N |
N3 |
N |
Y |
N |
0 |
2.934 |
0.347 |
2.12 |
28 |
N4 |
N |
N4 |
N |
Y |
N |
0 |
1.852 |
-0.348 |
2.101 |
29 |
O1 |
O |
O1 |
N |
N |
N |
0 |
6.453 |
3.925 |
-0.008 |
30 |
C10 |
C |
C25 |
N |
Y |
N |
0 |
4.974 |
0.663 |
0.719 |
31 |
C15 |
C |
C26 |
N |
N |
N |
0 |
7.753 |
4.414 |
-0.341 |
32 |
C16 |
C |
C27 |
N |
Y |
N |
0 |
5.093 |
2.042 |
0.517 |
33 |
O2 |
O |
O2 |
N |
N |
N |
0 |
4.004 |
2.846 |
0.635 |
34 |
CL1 |
CL |
CL1 |
N |
N |
N |
0 |
-3.058 |
-2.683 |
2.549 |
35 |
C24 |
C |
C28 |
N |
N |
N |
0 |
-4.544 |
1.14 |
-0.633 |
36 |
O3 |
O |
O3 |
N |
N |
N |
0 |
-4.28 |
2.239 |
-1.081 |
37 |
N5 |
N |
N5 |
N |
N |
N |
0 |
-5.823 |
0.716 |
-0.601 |
38 |
C29 |
C |
C29 |
N |
N |
N |
0 |
-7.14 |
2.763 |
-0.444 |
39 |
O4 |
O |
O4 |
N |
N |
N |
0 |
-8.148 |
3.583 |
-0.779 |
40 |
O5 |
O |
O5 |
N |
N |
N |
0 |
-6.362 |
3.084 |
0.422 |
41 |
O6 |
O |
O6 |
N |
N |
N |
0 |
0.245 |
-3.489 |
-0.976 |
42 |
H1 |
H |
H1 |
N |
N |
N |
0 |
5.549 |
-1.754 |
-3.307 |
43 |
H2 |
H |
H2 |
N |
N |
N |
0 |
5.127 |
-0.566 |
-1.198 |
44 |
H3 |
H |
H3 |
N |
N |
N |
0 |
1.845 |
-3.834 |
-2.931 |
45 |
H4 |
H |
H4 |
N |
N |
N |
0 |
6.014 |
-1.219 |
0.76 |
46 |
H5 |
H |
H5 |
N |
N |
N |
0 |
8.19 |
-0.236 |
0.182 |
47 |
H6 |
H |
H6 |
N |
N |
N |
0 |
8.399 |
2.186 |
-0.183 |
48 |
H7 |
H |
H7 |
N |
N |
N |
0 |
-0.146 |
-2.016 |
2.398 |
49 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-0.634 |
-3.291 |
1.255 |
50 |
H9 |
H |
H9 |
N |
N |
N |
0 |
-0.159 |
-0.322 |
-0.533 |
51 |
H10 |
H |
H10 |
N |
N |
N |
0 |
-1.951 |
1.13 |
-1.387 |
52 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-4.736 |
-0.784 |
1.253 |
53 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-6.467 |
-0.43 |
1.058 |
54 |
H13 |
H |
H13 |
N |
N |
N |
0 |
-5.57 |
-1.346 |
-0.19 |
55 |
H14 |
H |
H14 |
N |
N |
N |
0 |
-7.439 |
-1.318 |
-1.713 |
56 |
H15 |
H |
H15 |
N |
N |
N |
0 |
-8.269 |
-1.49 |
-0.131 |
57 |
H16 |
H |
H16 |
N |
N |
N |
0 |
-8.898 |
0.6 |
-1.763 |
58 |
H17 |
H |
H17 |
N |
N |
N |
0 |
-8.745 |
0.867 |
0.004 |
59 |
H18 |
H |
H18 |
N |
N |
N |
0 |
-6.844 |
1.603 |
-2.217 |
60 |
H19 |
H |
H19 |
N |
N |
N |
0 |
3.92 |
-3.379 |
-4.17 |
61 |
H20 |
H |
H20 |
N |
N |
N |
0 |
8.45 |
4.172 |
0.462 |
62 |
H21 |
H |
H21 |
N |
N |
N |
0 |
8.09 |
3.949 |
-1.268 |
63 |
H24 |
H |
H24 |
N |
N |
N |
0 |
-8.21 |
4.421 |
-0.3 |
64 |
H22 |
H |
H22 |
N |
N |
N |
0 |
7.712 |
5.496 |
-0.472 |
65 |
H23 |
H |
H23 |
N |
N |
N |
0 |
3.512 |
2.965 |
-0.189 |
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