Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : DYX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -0.926 -3.899 1.138
2 C13 C C2 N Y N 0 1.129 -3.977 -0.722
3 C17 C C3 N N N 0 -4.942 -0.025 0.571
4 C22 C C4 N N N 0 1.308 1.591 -1.631
5 C24 C C5 N N N 0 1.707 2.65 -3.827
6 C26 C C6 N N N 0 1.942 0.575 -2.603
7 C28 C C7 N Y N 0 1.693 1.686 0.841
8 C01 C C8 N N N 0 -0.044 1.102 -1.18
9 C04 C C9 N Y N 0 -1.395 -0.51 -0.077
10 C05 C C10 N Y N 0 -2.557 0.216 0.037
11 C06 C C11 N Y N 0 -3.57 -0.658 0.398
12 C09 C C12 N Y N 0 -0.789 -2.877 0.208
13 C11 C C13 N Y N 0 -0.038 -4.957 1.137
14 C12 C C14 N Y N 0 0.991 -4.998 0.207
15 C14 C C15 N Y N 0 0.241 -2.919 -0.722
16 C16 C C16 N N N 0 2.9 -6.017 -0.778
17 C19 C C17 N N N 0 -2.978 1.668 -0.127
18 C27 C C20 N Y N 0 2.207 1.794 -0.438
19 C23 C C18 N N N 0 1.159 2.91 -2.408
20 C25 C C19 N N N 0 1.579 1.117 -4.008
21 C29 C C21 N Y N 0 2.517 1.872 1.935
22 C30 C C22 N Y N 0 3.857 2.16 1.75
23 C31 C C23 N Y N 0 4.372 2.263 0.47
24 C32 C C24 N Y N 0 3.545 2.087 -0.623
25 N03 N N1 N N N 0 -0.14 -0.008 -0.422
26 N07 N N2 N Y N 0 -3.055 -1.873 0.502
27 N08 N N3 N Y N 0 -1.691 -1.803 0.208
28 O02 O O1 N N N 0 -1.045 1.707 -1.5
29 O15 O O2 N N N 0 1.865 -6.039 0.207
30 O20 O O3 N N N 0 -4.36 2.07 2.123
31 O21 O O4 N N N 0 -5.508 2.52 -0.011
32 S18 S S1 N N N 0 -4.581 1.761 0.753
33 CL1 CL CL1 N N N 0 4.893 2.394 3.124
34 H4 H H4 N N N 0 -5.432 -0.412 1.465
35 H1 H H1 N N N 0 -1.725 -3.865 1.864
36 H2 H H2 N N N 0 1.93 -4.009 -1.445
37 H3 H H3 N N N 0 -5.56 -0.203 -0.31
38 H5 H H5 N N N 0 1.106 3.174 -4.57
39 H6 H H6 N N N 0 2.751 2.959 -3.895
40 H7 H H7 N N N 0 3.024 0.546 -2.474
41 H8 H H8 N N N 0 1.512 -0.415 -2.454
42 H9 H H9 N N N 0 0.647 1.461 0.985
43 H10 H H10 N N N 0 -0.145 -5.752 1.86
44 H11 H H11 N N N 0 0.349 -2.124 -1.445
45 H12 H H12 N N N 0 2.455 -6.007 -1.773
46 H13 H H13 N N N 0 3.51 -5.123 -0.644
47 H14 H H14 N N N 0 3.525 -6.903 -0.668
48 H15 H H15 N N N 0 -2.248 2.332 0.335
49 H16 H H16 N N N 0 -3.103 1.912 -1.182
50 H17 H H17 N N N 0 0.109 3.196 -2.461
51 H18 H H18 N N N 0 1.737 3.697 -1.923
52 H19 H H19 N N N 0 0.558 0.844 -4.276
53 H20 H H20 N N N 0 2.286 0.757 -4.756
54 H21 H H21 N N N 0 2.115 1.791 2.934
55 H22 H H22 N N N 0 5.419 2.488 0.325
56 H23 H H23 N N N 0 3.946 2.171 -1.623
57 H24 H H24 N N N 0 0.663 -0.458 -0.116