Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : E3P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -7.734 2.979 -0.382
2 N1 N N1 N N N 0 -4.962 -0.321 -0.288
3 C2 C C2 N N N 0 -6.909 1.845 0.17
4 O2 O O2 N N N 0 -4.36 -1.599 1.423
5 C3 C C3 N N N 0 -7.219 0.564 -0.606
6 N3 N N3 N N N 0 -8.044 -2.321 -0.639
7 C4 C C4 S N N 0 -6.382 -0.587 -0.046
8 C5 C C5 N N N 0 -6.775 -1.873 -0.726
9 O5 O O5 N N N 0 -5.951 -2.505 -1.352
10 C6 C C6 N N N 0 -4.026 -0.878 0.507
11 O6 O O6 N N N 0 -8.492 2.782 -1.302
12 C7 C C7 N N N 0 -2.566 -0.604 0.257
13 O7 O O7 N N N 0 -7.631 4.206 0.151
14 C8 C C8 N N N 0 -1.723 -1.35 1.293
15 C9 C C9 N Y N 0 -0.262 -1.077 1.044
16 C10 C C10 N Y N 0 0.458 -1.899 0.196
17 C11 C C11 N Y N 0 1.796 -1.653 -0.036
18 C12 C C12 N Y N 0 2.422 -0.573 0.585
19 C13 C C13 N Y N 0 1.691 0.252 1.437
20 C14 C C14 N Y N 0 0.352 0.0 1.658
21 C15 C C15 N Y N 0 6.546 0.199 -0.12
22 C16 C C16 N Y N 0 5.818 1.028 0.733
23 C17 C C17 N Y N 0 4.482 0.777 0.961
24 C19 C C19 N Y N 0 3.859 -0.304 0.339
25 C35 C C35 N Y N 0 4.588 -1.132 -0.514
26 C36 C C36 N Y N 0 5.922 -0.879 -0.746
27 C37 C C37 N Y N 0 7.984 0.469 -0.366
28 C38 C C38 N Y N 0 8.61 1.546 0.258
29 C39 C C39 N Y N 0 9.948 1.792 0.026
30 C40 C C40 N Y N 0 10.667 0.972 -0.825
31 C41 C C41 N Y N 0 10.05 -0.098 -1.448
32 H2A H H2A N N N 0 -7.15 1.7 1.223
33 C42 C C42 N Y N 0 8.715 -0.357 -1.218
34 HN1 H HN1 N N N 0 -4.694 0.255 -1.021
35 H2 H H2 N N N 0 -5.85 2.084 0.069
36 H3 H H3 N N N 0 -8.278 0.325 -0.506
37 H3A H H3A N N N 0 -6.978 0.709 -1.659
38 HN3 H HN3 N N N 0 -8.703 -1.815 -0.138
39 HN3A H HN3A N N N 0 -8.297 -3.148 -1.077
40 H4 H H4 N N N 0 -6.557 -0.675 1.027
41 H7 H H7 N N N 0 -2.298 -0.945 -0.743
42 H7A H H7A N N N 0 -2.377 0.467 0.339
43 HO7 H HO7 N N N 0 -8.183 4.9 -0.234
44 H8 H H8 N N N 0 -1.99 -1.009 2.293
45 H8A H H8A N N N 0 -1.911 -2.421 1.212
46 H10 H H10 N N N 0 -0.027 -2.736 -0.284
47 H11 H H11 N N N 0 2.358 -2.296 -0.698
48 H13 H H13 N N N 0 2.171 1.09 1.921
49 H14 H H14 N N N 0 -0.216 0.641 2.316
50 H16 H H16 N N N 0 6.3 1.865 1.215
51 H17 H H17 N N N 0 3.918 1.418 1.622
52 H35 H H35 N N N 0 4.106 -1.97 -0.996
53 H36 H H36 N N N 0 6.486 -1.52 -1.407
54 H38 H H38 N N N 0 8.05 2.187 0.922
55 H39 H H39 N N N 0 10.435 2.626 0.509
56 H42 H H42 N N N 0 8.235 -1.196 -1.702
57 H40 H H40 N N N 0 11.714 1.168 -1.004
58 H41 H H41 N N N 0 10.617 -0.735 -2.112