Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EBM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 I I I N N N 0 -1.671 1.045 0.035
2 N N N N N N 0 2.676 -0.357 0.106
3 O O O N N N 0 0.963 1.056 0.11
4 C1 C C1 N Y N 0 -0.989 -0.935 -0.021
5 C2 C C2 N Y N 0 0.381 -1.204 0.008
6 C3 C C3 N Y N 0 0.827 -2.526 -0.029
7 C4 C C4 N Y N 0 -0.087 -3.557 -0.095
8 C5 C C5 N Y N 0 -1.443 -3.284 -0.124
9 C6 C C6 N Y N 0 -1.893 -1.977 -0.082
10 C7 C C7 N N N 0 1.354 -0.094 0.078
11 C8 C C8 N N N 0 3.641 0.743 0.175
12 C9 C C9 N N N 0 4.942 0.241 0.804
13 C10 C C10 N N N 0 3.923 1.263 -1.236
14 HN H HN N N N 0 2.988 -1.276 0.084
15 H3 H H3 N N N 0 1.885 -2.741 -0.007
16 H4 H H4 N N N 0 0.257 -4.581 -0.124
17 H5 H H5 N N N 0 -2.154 -4.095 -0.175
18 H6 H H6 N N N 0 -2.953 -1.77 -0.1
19 H8 H H8 N N N 0 3.23 1.548 0.783
20 H9 H H9 N N N 0 5.353 -0.565 0.195
21 H9A H H9A N N N 0 5.66 1.06 0.855
22 H9B H H9B N N N 0 4.741 -0.129 1.809
23 H10 H H10 N N N 0 4.334 0.457 -1.845
24 H10A H H10A N N N 0 2.996 1.62 -1.684
25 H10B H H10B N N N 0 4.641 2.081 -1.185