Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EJ3

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CBD C C1 N N N 0 3.531 4.41 1.137
2 CBC C C2 N N N 0 4.372 3.251 0.667
3 OBE O O1 N N N 0 5.566 3.393 0.51
4 NAG N N1 N Y N 0 3.798 2.057 0.422
5 CAH C C3 N Y N 0 2.468 1.788 0.559
6 CAD C C4 N Y N 0 4.472 0.926 -0.012
7 CAC C C5 N Y N 0 5.806 0.67 -0.306
8 CAB C C6 N Y N 0 6.191 -0.584 -0.727
9 CAA C C7 N Y N 0 5.253 -1.603 -0.862
10 OBF O O2 N N N 0 5.647 -2.836 -1.279
11 CBG C C8 N N N 0 7.037 -3.013 -1.56
12 CAF C C9 N Y N 0 3.922 -1.365 -0.573
13 CAE C C10 N Y N 0 3.525 -0.101 -0.148
14 CAI C C11 N Y N 0 2.227 0.49 0.231
15 CAJ C C12 N N N 0 0.924 -0.192 0.248
16 OAK O O3 N N N 0 0.847 -1.363 -0.07
17 NAL N N2 N N N 0 -0.184 0.481 0.615
18 CAM C C13 N Y N 0 -1.437 -0.139 0.541
19 CAN C C14 N Y N 0 -2.561 0.605 0.198
20 FAS F F1 N N N 0 -2.442 1.925 -0.063
21 CAR C C15 N Y N 0 -1.554 -1.494 0.804
22 CAQ C C16 N Y N 0 -2.803 -2.116 0.725
23 CAT C C17 N N N 0 -2.927 -3.561 1.0
24 OAV O O4 N N N 0 -1.837 -4.28 1.333
25 OAU O O5 N N N 0 -4.012 -4.102 0.927
26 CAP C C18 N Y N 0 -3.931 -1.371 0.381
27 CAO C C19 N Y N 0 -3.81 -0.011 0.123
28 CAW C C20 N Y N 0 -5.01 0.785 -0.244
29 CBA C C21 N Y N 0 -5.923 0.469 -1.207
30 CAX C C22 N Y N 0 -5.414 1.999 0.344
31 NAY N N3 N Y N 0 -6.513 2.39 -0.246
32 NAZ N N4 N Y N 0 -6.853 1.446 -1.223
33 CBB C C23 N N N 0 -8.017 1.509 -2.109
34 H1 H H1 N N N 0 4.165 5.285 1.281
35 H2 H H2 N N N 0 2.77 4.633 0.389
36 H3 H H3 N N N 0 3.049 4.151 2.08
37 H4 H H4 N N N 0 1.72 2.498 0.88
38 H5 H H5 N N N 0 6.541 1.455 -0.204
39 H6 H H6 N N N 0 7.229 -0.778 -0.955
40 H7 H H7 N N N 0 7.215 -4.039 -1.883
41 H8 H H8 N N N 0 7.338 -2.326 -2.352
42 H9 H H9 N N N 0 7.618 -2.808 -0.661
43 H10 H H10 N N N 0 3.194 -2.156 -0.678
44 H11 H H11 N N N 0 -0.114 1.396 0.931
45 H12 H H12 N N N 0 -0.68 -2.07 1.07
46 H13 H H13 N N N 0 -1.968 -5.222 1.504
47 H14 H H14 N N N 0 -4.897 -1.85 0.319
48 H15 H H15 N N N 0 -5.905 -0.405 -1.841
49 H16 H H16 N N N 0 -4.903 2.519 1.141
50 H17 H H17 N N N 0 -7.751 2.042 -3.022
51 H19 H H19 N N N 0 -8.83 2.033 -1.606
52 H18 H H18 N N N 0 -8.338 0.498 -2.36