Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EJB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 65


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C17 C C1 N Y N 0 9.019 -1.216 0.49
2 C20 C C2 N Y N 0 11.045 -0.228 0.966
3 C21 C C3 N Y N 0 10.8 0.796 0.071
4 C22 C C4 N Y N 0 9.607 0.806 -0.635
5 C11 C C5 N N N 0 1.507 1.288 0.163
6 C12 C C6 N N N 0 2.593 0.751 -0.772
7 C14 C C7 N N N 0 5.028 0.234 -0.985
8 C19 C C8 N N N 0 8.332 -3.485 -0.237
9 C1 C C9 N Y N 0 -8.689 -0.757 -1.105
10 O1 O O1 N N N 0 -3.818 4.016 0.628
11 C8 C C10 S N N 0 -3.614 2.645 0.977
12 C7 C C11 R N N 0 -4.929 1.847 0.826
13 O O O2 N N N 0 -5.984 2.701 0.379
14 C9 C C12 S N N 0 -2.648 1.97 -0.022
15 O2 O O3 N N N 0 -3.166 0.633 -0.19
16 C6 C C13 R N N 0 -4.602 0.785 -0.247
17 N3 N N1 N Y N 0 -5.262 -0.484 0.073
18 C2 C C14 N Y N 0 -6.548 -0.805 -0.262
19 N2 N N2 N Y N 0 -7.521 -0.179 -0.922
20 N1 N N3 N Y N 0 -8.964 -1.968 -0.655
21 C5 C C15 N Y N 0 -4.68 -1.523 0.753
22 C4 C C16 N Y N 0 -5.557 -2.532 0.877
23 C3 C C17 N Y N 0 -6.793 -2.102 0.225
24 C C C18 N Y N 0 -8.055 -2.675 0.011
25 N N N4 N N N 0 -8.348 -3.943 0.48
26 C10 C C19 N N N 0 -1.232 1.925 0.554
27 S S S1 N N N 0 -0.092 1.265 -0.693
28 C13 C C20 N N N 0 3.942 0.771 -0.05
29 N4 N N5 N N N 0 6.323 0.253 -0.292
30 C15 C C21 N N N 0 7.393 -0.257 -1.161
31 C16 C C22 N Y N 0 8.703 -0.223 -0.417
32 N5 N N6 N Y N 0 10.162 -1.19 1.147
33 C18 C C23 N N N 0 8.044 -2.339 0.735
34 H4 H H4 N N N 0 1.452 0.661 1.053
35 H1 H H1 N N N 0 11.97 -0.241 1.523
36 H2 H H2 N N N 0 11.527 1.582 -0.074
37 H3 H H3 N N N 0 9.389 1.594 -1.341
38 H5 H H5 N N N 0 1.749 2.31 0.452
39 H6 H H6 N N N 0 2.351 -0.271 -1.061
40 H7 H H7 N N N 0 2.648 1.377 -1.662
41 H8 H H8 N N N 0 4.786 -0.789 -1.274
42 H9 H H9 N N N 0 5.083 0.86 -1.875
43 H10 H H10 N N N 0 8.225 -3.128 -1.262
44 H11 H H11 N N N 0 9.348 -3.846 -0.082
45 H12 H H12 N N N 0 7.626 -4.297 -0.06
46 H13 H H13 N N N 0 -9.455 -0.217 -1.641
47 H14 H H14 N N N 0 -4.462 4.472 1.187
48 H15 H H15 N N N 0 -3.233 2.564 1.994
49 H16 H H16 N N N 0 -5.196 1.369 1.768
50 H17 H H17 N N N 0 -6.19 3.423 0.988
51 H18 H H18 N N N 0 -2.655 2.502 -0.974
52 H19 H H19 N N N 0 -4.907 1.134 -1.233
53 H20 H H20 N N N 0 -3.669 -1.528 1.132
54 H21 H H21 N N N 0 -5.383 -3.48 1.364
55 H22 H H22 N N N 0 -9.225 -4.327 0.325
56 H23 H H23 N N N 0 -7.676 -4.447 0.965
57 H24 H H24 N N N 0 -0.921 2.931 0.834
58 H25 H H25 N N N 0 -1.219 1.283 1.435
59 H26 H H26 N N N 0 4.185 1.793 0.239
60 H27 H H27 N N N 0 3.887 0.144 0.84
61 H28 H H28 N N N 0 6.541 1.179 0.043
62 H30 H H30 N N N 0 7.167 -1.283 -1.451
63 H31 H H31 N N N 0 7.464 0.366 -2.052
64 H32 H H32 N N N 0 8.151 -2.696 1.759
65 H33 H H33 N N N 0 7.028 -1.977 0.58