Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EKB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -4.079 1.159 -1.659
2 C2 C C2 N Y N 0 -5.234 0.85 -1.089
3 N3 N N3 N Y N 0 -5.296 0.176 0.051
4 C4 C C4 N Y N 0 -4.197 -0.219 0.672
5 C5 C C5 N Y N 0 -2.955 0.082 0.111
6 C6 C C6 N Y N 0 -2.928 0.8 -1.102
7 C1A C C1A N N N 0 -4.346 -2.484 1.671
8 C1B C C1B N N N 0 3.301 3.05 1.859
9 C1C C C1C N N N 0 3.148 -3.108 -1.785
10 C1D C C1D N N N 0 6.206 0.308 -0.664
11 N1E N N1E N N N 0 -6.41 1.242 -1.702
12 N1F N N1F N N N 0 -1.725 1.124 -1.701
13 C1G C C1G N N N 0 -0.745 -0.662 1.274
14 C1H C C1H N N N 0 -1.741 -0.327 0.75
15 C1I C C1I N Y N 0 2.246 0.614 1.345
16 C1J C C1J N Y N 0 2.195 -1.448 0.126
17 C1K C C1K N N N 0 -4.285 -0.984 1.967
18 C1L C C1L N N N 0 0.503 -1.082 1.932
19 O1O O O1O N N N 0 3.882 2.26 0.82
20 O1P O O1P N N N 0 3.776 -1.837 -1.609
21 O1Q O O1Q N N N 0 4.903 0.633 -1.153
22 C1S C C1S N Y N 0 1.681 -0.626 1.111
23 H1A H H1A N N N 0 -4.409 -3.037 2.608
24 C1V C C1V N Y N 0 3.327 1.04 0.588
25 C1W C C1W N Y N 0 3.272 -1.027 -0.64
26 C1Y C C1Y N Y N 0 3.842 0.219 -0.407
27 H1AA H H1AA N N N 0 -5.224 -2.698 1.063
28 H1AB H H1AB N N N 0 -3.447 -2.784 1.132
29 H1B H H1B N N N 0 2.254 3.244 1.626
30 H1BA H H1BA N N N 0 3.369 2.513 2.805
31 H1BB H H1BB N N N 0 3.837 3.996 1.939
32 H1C H H1C N N N 0 2.098 -2.962 -2.042
33 H1CA H H1CA N N N 0 3.646 -3.652 -2.587
34 H1CB H H1CB N N N 0 3.219 -3.68 -0.859
35 H1D H H1D N N N 0 6.347 0.756 0.32
36 H1DA H H1DA N N N 0 6.306 -0.774 -0.589
37 H1DB H H1DB N N N 0 6.958 0.696 -1.351
38 HN1E H HN1E N N N 0 -6.381 1.736 -2.536
39 HN1A H HN1A N N N 0 -7.264 1.023 -1.297
40 HN1F H HN1F N N N 0 -0.889 0.857 -1.287
41 HN1B H HN1B N N N 0 -1.716 1.618 -2.536
42 H1I H H1I N N N 0 1.842 1.253 2.116
43 H1J H H1J N N N 0 1.751 -2.416 -0.054
44 H1K H H1K N N N 0 -3.406 -0.769 2.576
45 H1KA H H1KA N N N 0 -5.183 -0.683 2.507
46 H1L H H1L N N N 0 0.558 -0.637 2.925
47 H1LA H H1LA N N N 0 0.52 -2.169 2.019