Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EKF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 0.68 1.445 -0.307
2 C2 C C2 N Y N 0 1.535 0.357 -0.253
3 C3 C C3 N Y N 0 0.937 -0.979 -0.287
4 C12 C C4 N N N 0 -3.378 1.169 -0.537
5 C13 C C5 N Y N 0 -4.832 0.782 -0.619
6 C14 C C6 N Y N 0 -5.486 0.799 -1.838
7 C15 C C7 N Y N 0 -6.82 0.442 -1.907
8 C16 C C8 N Y N 0 -7.502 0.072 -0.767
9 C17 C C9 N Y N 0 -6.853 0.056 0.465
10 C18 C C10 N Y N 0 -5.509 0.405 0.519
11 C20 C C11 N N N 0 -6.232 -0.553 2.575
12 C21 C C12 N N N 0 -5.074 0.273 1.966
13 C22 C C13 N Y N 0 3.567 1.133 0.963
14 C23 C C14 N Y N 0 4.935 1.299 1.039
15 C24 C C15 N Y N 0 5.745 0.879 0.0
16 C25 C C16 N Y N 0 5.19 0.29 -1.122
17 C26 C C17 N Y N 0 3.824 0.117 -1.21
18 C27 C C18 N N N 0 7.238 1.064 0.089
19 C29 C C19 N N N 0 7.687 -1.304 -0.143
20 C30 C C20 N N N 0 9.256 0.117 1.034
21 C9 C C21 N Y N 0 -0.711 -2.406 -0.383
22 O19 O O1 N N N 0 -7.332 -0.254 1.701
23 N8 N N1 N Y N 0 0.429 -3.043 -0.315
24 N28 N N2 N N N 0 7.842 -0.12 0.714
25 N6 N N3 N Y N 0 -0.637 1.258 -0.381
26 C5 C C22 N Y N 0 -1.186 0.065 -0.407
27 N7 N N4 N Y N 0 1.406 -2.206 -0.257
28 N4 N N6 N Y N 0 -0.434 -1.072 -0.37
29 C10 C C23 N Y N 0 3.002 0.539 -0.165
30 N11 N N5 N N N 0 -2.553 -0.04 -0.484
31 H1 H H1 N N N 0 1.082 2.447 -0.284
32 H2 H H2 N N N 0 -3.109 1.755 -1.416
33 H3 H H3 N N N 0 -3.21 1.764 0.361
34 H7 H H7 N N N 0 -6.001 -1.618 2.549
35 H4 H H4 N N N 0 -4.956 1.091 -2.733
36 H5 H H5 N N N 0 -7.33 0.452 -2.859
37 H6 H H6 N N N 0 -8.544 -0.205 -0.829
38 H8 H H8 N N N 0 -4.129 -0.264 2.044
39 H9 H H9 N N N 0 2.937 1.457 1.777
40 H10 H H10 N N N 0 5.374 1.759 1.913
41 H11 H H11 N N N 0 5.827 -0.036 -1.931
42 H12 H H12 N N N 0 3.392 -0.343 -2.087
43 H13 H H13 N N N 0 7.648 1.196 -0.912
44 H14 H H14 N N N 0 7.459 1.945 0.692
45 H15 H H15 N N N 0 8.08 -2.18 0.373
46 H16 H H16 N N N 0 6.631 -1.456 -0.365
47 H17 H H17 N N N 0 8.236 -1.153 -1.072
48 H20 H H20 N N N 0 9.678 -0.776 1.496
49 H18 H H18 N N N 0 9.802 0.346 0.119
50 H19 H H19 N N N 0 9.336 0.956 1.726
51 H21 H H21 N N N 0 -1.691 -2.855 -0.442
52 H23 H H23 N N N 0 -2.971 -0.914 -0.504
53 H24 H H24 N N N 0 -6.445 -0.228 3.593
54 H25 H H25 N N N 0 -5.004 1.253 2.44