Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : EOI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 -2.747 4.247 0.373
2 N N N N Y N 0 -3.972 0.83 -0.709
3 O O O N N N 0 -2.197 2.052 1.222
4 P P P R N N 0 -0.064 0.836 0.188
5 S S S N N N 0 -0.68 -1.118 0.733
6 C1 C C1 R N N 0 -2.671 2.75 0.069
7 N1 N N1 N Y N 0 -3.792 -0.934 -1.982
8 O1 O O1 N N N 0 -0.534 1.137 -1.183
9 P1 P P1 N N N 0 2.73 0.15 -0.528
10 C2 C C2 N N N 0 -4.063 2.234 -0.303
11 N2 N N2 N Y N 0 -4.074 -0.434 1.439
12 O2 O O2 N N N 0 1.543 0.925 0.236
13 P2 P P2 N N N 0 5.522 -0.444 0.271
14 C3 C C3 N Y N 0 -3.854 0.366 -1.986
15 N3 N N3 N Y N 0 -3.949 -2.731 1.217
16 O3 O O3 N N N 0 2.386 -1.285 -0.646
17 C4 C C4 N Y N 0 -3.867 -1.385 -0.707
18 N4 N N4 N N N 0 -3.739 -3.801 -0.874
19 O4 O O4 N N N 0 2.922 0.779 -1.997
20 C5 C C5 N Y N 0 -3.983 -0.259 0.125
21 O5 O O5 N N N 0 4.098 0.307 0.307
22 C6 C C6 N Y N 0 -4.056 -1.643 1.959
23 O6 O O6 N N N 0 6.408 0.143 -0.938
24 C7 C C7 N Y N 0 -3.851 -2.656 -0.106
25 O7 O O7 N N N 0 6.29 -0.203 1.666
26 C8 C C8 N N N 0 -0.774 2.045 1.353
27 O8 O O8 N N N 0 5.31 -1.894 0.069
28 H H H N N N 0 -1.775 4.596 0.722
29 HA H HA N N N 0 -3.024 4.788 -0.531
30 HB H HB N N N 0 -3.495 4.424 1.146
31 HS H HS N N N 0 -0.192 -1.252 1.979
32 H1 H H1 N N N 0 -1.988 2.582 -0.763
33 H2 H H2 N N N 0 -4.462 2.826 -1.127
34 H2A H H2A N N N 0 -4.725 2.32 0.56
35 H3 H H3 N N N 0 -3.817 0.986 -2.869
36 HN4 H HN4 N N N 0 -3.73 -4.672 -0.447
37 HN4A H HN4A N N N 0 -3.669 -3.733 -1.839
38 HO6 H HO6 N N N 0 6.586 1.091 -0.871
39 HO4 H HO4 N N N 0 3.15 1.718 -1.997
40 H6 H H6 N N N 0 -4.131 -1.75 3.031
41 HO7 H HO7 N N N 0 7.157 -0.627 1.715
42 H8 H H8 N N N 0 -0.384 3.038 1.13
43 H8A H H8A N N N 0 -0.504 1.769 2.372