Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : F5D

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 78


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 -7.836 3.725 -0.872
2 C13 C C2 R N N 0 -4.477 -0.738 0.676
3 C21 C C3 N N N 0 2.749 0.965 1.088
4 C22 C C4 N N N 0 4.131 0.716 0.48
5 C24 C C5 N N N 0 6.538 1.385 0.544
6 C28 C C6 R N N 0 9.824 3.36 0.86
7 C02 C C7 N Y N 0 -8.911 4.629 -0.822
8 C04 C C8 N Y N 0 -9.69 3.546 1.062
9 C06 C C9 N Y N 0 -7.761 2.729 0.117
10 C08 C C10 N Y N 0 -6.065 2.542 -1.28
11 C11 C C11 R N N 0 -6.134 0.848 0.589
12 C14 C C12 N N N 0 -3.211 -1.245 -0.018
13 C19 C C13 N N N 0 1.74 0.062 0.427
14 C23 C C14 N N N 0 5.156 1.633 1.151
15 C25 C C15 S N N 0 7.562 2.302 1.215
16 C27 C C16 N N N 0 8.968 4.628 1.008
17 C30 C C17 R N N 0 9.632 3.099 -1.446
18 C33 C C18 S N N 0 8.968 2.105 0.603
19 C43 C C19 S N N 0 -5.714 -1.516 0.174
20 C45 C C20 R N N 0 -6.829 -0.448 0.115
21 N01 N N1 N N N 0 -9.038 5.63 -1.769
22 N03 N N2 N Y N 0 -9.803 4.499 0.155
23 N05 N N3 N Y N 0 -8.7 2.678 1.055
24 N07 N N4 N Y N 0 -6.634 1.999 -0.167
25 N09 N N5 N Y N 0 -6.769 3.558 -1.689
26 N29 N N6 N N N 0 10.613 3.488 -0.4
27 N32 N N7 N N N 0 8.862 1.977 -0.863
28 O12 O O1 N N N 0 -4.732 0.636 0.313
29 O15 O O2 N N N 0 -2.068 -0.597 0.542
30 O17 O O3 N N N 0 -0.472 -0.675 -1.412
31 O18 O O4 N N N 0 0.452 0.106 0.803
32 O20 O O5 N N N 0 2.091 -0.703 -0.441
33 O31 O O6 N N N 0 10.312 2.67 -2.628
34 O34 O O7 N N N 0 -0.174 -2.414 0.392
35 O36 O O8 N N N 0 1.25 -3.215 -1.532
36 O37 O O9 N N N 0 2.349 -3.067 0.736
37 O38 O O10 N N N 0 0.572 -4.928 0.194
38 O40 O O11 N N N 0 2.601 -6.371 -0.219
39 O41 O O12 N N N 0 0.519 -7.52 0.627
40 O42 O O13 N N N 0 0.673 -6.601 -1.831
41 O44 O O14 N N N 0 -6.061 -2.552 1.095
42 O46 O O15 N N N 0 -7.899 -0.793 0.997
43 P16 P P1 S N N 0 -0.563 -0.89 0.049
44 P35 P P2 N N N 0 1.005 -3.402 -0.084
45 P39 P P3 N N N 0 1.124 -6.355 -0.305
46 S26 S S1 N N N 0 7.235 4.066 0.81
47 H1 H H1 N N N 0 -4.38 -0.835 1.758
48 H2 H H2 N N N 0 2.78 0.755 2.157
49 H3 H H3 N N N 0 2.465 2.005 0.93
50 H4 H H4 N N N 0 4.416 -0.324 0.639
51 H5 H H5 N N N 0 4.101 0.926 -0.589
52 H6 H H6 N N N 0 6.823 0.345 0.702
53 H7 H H7 N N N 0 6.508 1.595 -0.525
54 H8 H H8 N N N 0 10.467 3.221 1.729
55 H9 H H9 N N N 0 -10.437 3.477 1.839
56 H10 H H10 N N N 0 -5.161 2.185 -1.751
57 H11 H H11 N N N 0 -6.295 0.996 1.656
58 H12 H H12 N N N 0 -3.125 -2.322 0.126
59 H13 H H13 N N N 0 -3.268 -1.025 -1.084
60 H14 H H14 N N N 0 4.871 2.674 0.993
61 H15 H H15 N N N 0 5.186 1.424 2.221
62 H16 H H16 N N N 0 7.578 2.145 2.293
63 H18 H H18 N N N 0 9.112 5.069 1.995
64 H19 H H19 N N N 0 9.222 5.349 0.231
65 H20 H H20 N N N 0 8.97 3.934 -1.672
66 H21 H H21 N N N 0 9.452 1.224 1.026
67 H23 H H23 N N N 0 -5.528 -1.93 -0.817
68 H24 H H24 N N N 0 -7.195 -0.335 -0.905
69 H25 H H25 N N N 0 -8.381 5.714 -2.477
70 H26 H H26 N N N 0 -9.785 6.248 -1.724
71 H27 H H27 N N N 0 10.928 4.437 -0.535
72 H29 H H29 N N N 0 7.898 2.008 -1.159
73 H31 H H31 N N N 0 10.866 3.352 -3.032
74 H32 H H32 N N N 0 2.262 -3.169 1.693
75 H33 H H33 N N N 0 0.81 -8.41 0.383
76 H34 H H34 N N N 0 -0.285 -6.603 -1.963
77 H35 H H35 N N N 0 -6.831 -3.072 0.829
78 H36 H H36 N N N 0 -8.371 -1.6 0.747