Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : F5L

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 84


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C02 C C1 N N N 0 -1.056 -1.609 0.584
2 C04 C C2 S N N 0 1.282 -1.034 0.211
3 C05 C C3 N N N 0 1.969 -2.399 0.13
4 C06 C C4 N N N 0 3.31 -2.339 0.863
5 C07 C C5 N N N 0 3.065 -2.134 2.36
6 C08 C C6 N N N 0 4.069 -3.65 0.646
7 C09 C C7 N N N 0 2.019 -0.049 -0.659
8 C11 C C8 S N N 0 3.86 1.503 -1.037
9 C12 C C9 N N N 0 4.792 2.305 -0.127
10 C13 C C10 S N N 0 3.965 3.037 0.932
11 C14 C C11 N N N 0 3.313 2.048 1.872
12 C16 C C12 N N N 0 5.14 2.909 3.018
13 C17 C C13 N N N 0 4.882 3.882 1.846
14 C19 C C14 R N N 0 4.672 0.871 -2.17
15 C23 C C15 N N N 0 -3.319 -2.116 1.148
16 C24 C C16 N N N 0 -4.543 -2.778 0.492
17 C25 C C17 N N N 0 -5.19 -1.387 0.486
18 C26 C C18 N N N 0 -4.889 -0.58 -0.776
19 C27 C C19 N N N 0 -5.391 0.856 -0.586
20 C29 C C20 N N N 0 -7.74 1.477 -0.868
21 C30 C C21 N N N 0 -9.161 1.518 -0.369
22 C31 C C22 N N N 0 -9.853 2.773 -0.905
23 C32 C C23 N N N 0 -9.909 0.276 -0.856
24 C34 C C24 N N N 0 -7.165 0.038 1.024
25 C35 C C25 N N N 0 -6.675 -1.404 0.844
26 C36 C C26 N N N 0 -4.28 -1.034 1.669
27 N03 N N1 N N N 0 -0.102 -1.155 -0.253
28 N10 N N2 N N N 0 3.207 0.448 -0.258
29 N15 N N3 N N N 0 3.988 2.0 3.033
30 N28 N N4 N N N 0 -6.798 0.814 -0.168
31 O01 O O1 N N N 0 -0.754 -2.003 1.693
32 O18 O O2 N N N 0 2.325 1.393 1.615
33 O20 O O3 N N N 0 3.788 0.219 -3.083
34 O21 O O4 N N N 0 1.544 0.298 -1.72
35 O22 O O5 N N N 0 -2.345 -1.62 0.193
36 O33 O O6 N N N 0 -7.443 2.04 -1.901
37 H1 H H1 N N N 0 1.29 -0.684 1.243
38 H2 H H2 N N N 0 1.334 -3.153 0.595
39 H3 H H3 N N N 0 2.137 -2.659 -0.915
40 H4 H H4 N N N 0 3.9 -1.509 0.475
41 H5 H H5 N N N 0 4.02 -2.019 2.872
42 H6 H H6 N N N 0 2.462 -1.239 2.51
43 H7 H H7 N N N 0 2.538 -2.999 2.763
44 H8 H H8 N N N 0 4.244 -3.796 -0.42
45 H9 H H9 N N N 0 5.025 -3.607 1.168
46 H10 H H10 N N N 0 3.479 -4.48 1.035
47 H11 H H11 N N N 0 3.104 2.165 -1.458
48 H12 H H12 N N N 0 5.493 1.629 0.363
49 H13 H H13 N N N 0 5.344 3.032 -0.723
50 H14 H H14 N N N 0 3.212 3.667 0.458
51 H15 H H15 N N N 0 6.06 2.349 2.848
52 H16 H H16 N N N 0 5.201 3.457 3.959
53 H17 H H17 N N N 0 5.813 4.136 1.338
54 H18 H H18 N N N 0 4.37 4.78 2.191
55 H19 H H19 N N N 0 5.229 1.648 -2.694
56 H21 H H21 N N N 0 -2.869 -2.717 1.938
57 H22 H H22 N N N 0 -4.345 -3.172 -0.505
58 H23 H H23 N N N 0 -5.051 -3.495 1.138
59 H24 H H24 N N N 0 -3.814 -0.57 -0.954
60 H25 H H25 N N N 0 -5.396 -1.034 -1.628
61 H26 H H26 N N N 0 -4.797 1.352 0.182
62 H27 H H27 N N N 0 -5.305 1.401 -1.526
63 H28 H H28 N N N 0 -9.163 1.54 0.721
64 H29 H H29 N N N 0 -9.931 2.71 -1.99
65 H30 H H30 N N N 0 -10.851 2.85 -0.474
66 H31 H H31 N N N 0 -9.271 3.654 -0.633
67 H32 H H32 N N N 0 -9.416 -0.618 -0.474
68 H33 H H33 N N N 0 -10.937 0.306 -0.494
69 H34 H H34 N N N 0 -9.907 0.254 -1.945
70 H35 H H35 N N N 0 -8.248 0.043 1.144
71 H36 H H36 N N N 0 -6.697 0.475 1.906
72 H37 H H37 N N N 0 -7.238 -1.883 0.042
73 H38 H H38 N N N 0 -6.82 -1.957 1.772
74 H39 H H39 N N N 0 -4.715 -1.267 2.641
75 H40 H H40 N N N 0 -3.87 -0.025 1.619
76 H41 H H41 N N N 0 -0.332 -0.909 -1.163
77 H42 H H42 N N N 0 3.628 0.107 0.546
78 H43 H H43 N N N 0 3.745 1.437 3.785
79 H44 H H44 N N N 0 3.26 -0.485 -2.684
80 S1 S S1 N N Y 0 5.831 -0.342 -1.48
81 O1 O O7 N N N 0 5.129 -1.462 -0.959
82 O3 O O8 N N N 0 6.57 -0.892 -2.691
83 O2 O O9 N N N 0 6.84 0.309 -0.719
84 H20 H H20 N N N 0 7.234 -1.562 -2.475