Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : F6U

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 5.668 -1.877 0.112
2 C2 C C1 N Y N 0 4.484 -2.304 -0.288
3 N3 N N2 N Y N 0 3.5 -1.483 -0.586
4 C4 C C2 N Y N 0 3.665 -0.167 -0.494
5 OP1 O O1 N N N 0 -4.958 -1.343 0.935
6 P P P1 N N N 0 -5.036 -0.431 -0.228
7 OP2 O O2 N N N 0 -6.218 0.637 0.006
8 O3' O O3 N N N 0 -3.636 0.345 -0.397
9 C3' C C3 R N N 0 -3.037 1.106 0.654
10 C3A C C4 N N N 0 -2.883 2.561 0.206
11 C2' C C5 R N N 0 -1.66 0.525 0.983
12 C1' C C6 N N N 0 -1.8 -0.962 1.311
13 O1' O O4 N N N 0 -2.456 -1.629 0.23
14 N2' N N3 N N N 0 -0.772 0.691 -0.17
15 C2A C C7 N N N 0 0.563 0.737 0.009
16 O2A O O5 N N N 0 1.029 0.643 1.125
17 C2B C C8 N N N 0 1.477 0.907 -1.177
18 N9 N N4 N Y N 0 2.869 0.927 -0.722
19 C8 C C9 N Y N 0 3.612 2.037 -0.447
20 N7 N N5 N Y N 0 4.806 1.689 -0.067
21 C5 C C10 N Y N 0 4.906 0.338 -0.073
22 C6 C C11 N Y N 0 5.926 -0.579 0.234
23 N6 N N6 N N N 0 7.17 -0.141 0.653
24 H1 H H1 N N N 0 4.317 -3.368 -0.374
25 HOP2 H H3 N N N 0 -6.327 1.268 -0.719
26 H4 H H4 N N N 0 -3.671 1.064 1.54
27 H5 H H5 N N N 0 -2.249 2.603 -0.68
28 H6 H H6 N N N 0 -3.864 2.975 -0.029
29 H7 H H7 N N N 0 -2.426 3.142 1.007
30 H8 H H8 N N N 0 -1.241 1.049 1.843
31 H9 H H9 N N N 0 -0.811 -1.396 1.458
32 H10 H H10 N N N 0 -2.388 -1.081 2.221
33 H11 H H11 N N Y 0 -2.578 -2.578 0.369
34 H12 H H12 N N N 0 -1.145 0.766 -1.062
35 H13 H H13 N N N 0 1.333 0.077 -1.869
36 H14 H H14 N N N 0 1.246 1.845 -1.683
37 H15 H H15 N N N 0 3.26 3.055 -0.533
38 H16 H H16 N N N 0 7.346 0.809 0.738
39 H17 H H17 N N N 0 7.866 -0.784 0.862
40 OP3 O OP4 N N Y 0 -5.34 -1.285 -1.559
41 HOP3 H H2 N N Y 0 -6.17 -1.779 -1.528