Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : FNR

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C9A C C9A N Y N 0 2.624 1.212 -0.293
2 N10 N N10 N N N 0 2.114 -0.053 -0.627
3 C4 C C4 N N N 0 4.699 -2.27 0.71
4 CAA C C10A N N N 0 2.861 -1.181 -0.366
5 N1 N N1 N N N 0 2.52 -2.388 -0.928
6 C2 C C2 N N N 0 3.253 -3.487 -0.669
7 O2 O O2 N N N 0 2.938 -4.548 -1.174
8 N3 N N3 N N N 0 4.328 -3.433 0.138
9 O4 O O4 N N N 0 5.675 -2.226 1.441
10 C4A C C4A N N N 0 3.952 -1.109 0.456
11 N5 N N5 N N N 0 4.319 0.129 1.039
12 C5A C C5A N Y N 0 3.735 1.305 0.546
13 C6 C C6 N Y N 0 4.247 2.546 0.881
14 C7 C C7 N Y N 0 3.655 3.693 0.381
15 C7M C C7M N N N 0 4.211 5.046 0.744
16 C8 C C8 N Y N 0 2.555 3.601 -0.45
17 C8M C C8M N N N 0 1.916 4.855 -0.99
18 C9 C C9 N Y N 0 2.04 2.362 -0.793
19 C1' C C1' N N N 0 0.792 -0.174 -1.248
20 C2' C C2' S N N 0 -0.284 -0.18 -0.16
21 O2' O O2' N N N 0 -0.14 -1.352 0.645
22 O4' O O4' N N N 0 -2.601 -1.355 1.08
23 C3' C C3' S N N 0 -1.668 -0.176 -0.812
24 O3' O O3' N N N 0 -1.811 0.996 -1.617
25 C4' C C4' R N N 0 -2.744 -0.183 0.275
26 C5' C C5' N N N 0 -4.128 -0.178 -0.377
27 O5' O O5' N N N 0 -5.131 -0.067 0.635
28 P P P N N N 0 -6.707 -0.032 0.307
29 O1P O O1P N N N 0 -7.052 1.301 -0.528
30 O2P O O2P N N N 0 -7.072 -1.223 -0.492
31 O3P O O3P N N N 0 -7.542 -0.033 1.684
32 HN1 H HN1 N N N 0 1.748 -2.448 -1.513
33 H3 H H3 N N N 0 4.84 -4.239 0.31
34 H5 H H5 N N N 0 4.962 0.162 1.765
35 H7 H H7 N N N 0 5.107 2.619 1.531
36 H7M1 H H7M1 N N N 0 4.966 5.336 0.014
37 H7M2 H H7M2 N N N 0 3.406 5.781 0.747
38 H7M3 H H7M3 N N N 0 4.663 4.999 1.735
39 H8M1 H H8M1 N N N 0 2.383 5.121 -1.939
40 H8M2 H H8M2 N N N 0 0.851 4.682 -1.146
41 H8M3 H H8M3 N N N 0 2.051 5.668 -0.277
42 H9 H H9 N N N 0 1.183 2.294 -1.446
43 H1'1 H H1'1 N N N 0 0.627 0.671 -1.917
44 H1'2 H H1'2 N N N 0 0.741 -1.103 -1.815
45 H6 H H6 N N N 0 -0.174 0.706 0.465
46 H2' H H2' N N N 0 -0.19 -2.18 0.147
47 H4 H H4 N N N 0 -1.778 -1.062 -1.438
48 H3' H H3' N N N 0 -1.725 1.824 -1.125
49 H2 H H2 N N N 0 -2.634 0.703 0.9
50 H4' H H4' N N N 0 -2.687 -2.183 0.588
51 H3P H H3P N N N 0 -8.501 -0.013 1.563
52 H5'1 H H5'1 N N N 0 -4.206 0.668 -1.06
53 H5'2 H H5'2 N N N 0 -4.272 -1.106 -0.931
54 H1 H H1 N N N 0 -6.839 2.122 -0.064