Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G1P

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.172 -0.468 0.939
2 C2 C C2 R N N 0 -0.839 -1.612 0.821
3 C3 C C3 S N N 0 -1.782 -1.331 -0.353
4 C4 C C4 S N N 0 -2.46 0.025 -0.135
5 C5 C C5 R N N 0 -1.387 1.105 0.019
6 C6 C C6 N N N 0 -2.055 2.453 0.297
7 O1 O O1 N N N 0 0.964 -0.409 -0.249
8 O2 O O2 N N N 0 -0.146 -2.841 0.594
9 O3 O O3 N N N 0 -2.774 -2.356 -0.425
10 O4 O O4 N N N 0 -3.287 0.331 -1.26
11 O5 O O5 N N N 0 -0.526 0.767 1.109
12 O6 O O6 N N N 0 -1.062 3.48 0.325
13 P P P N N N 0 2.487 0.113 -0.262
14 O1P O O1P N N N 0 2.55 1.467 0.332
15 O2P O O2P N N N 0 3.407 -0.892 0.597
16 O3P O O3P N N N 0 3.023 0.167 -1.779
17 H1 H H1 N N N 0 0.819 -0.642 1.799
18 H2 H H2 N N N 0 -1.417 -1.684 1.743
19 H3 H H3 N N N 0 -1.211 -1.308 -1.281
20 H4 H H4 N N N 0 -3.071 -0.014 0.767
21 H5 H H5 N N N 0 -0.803 1.171 -0.899
22 H61 H H61 N N N 0 -2.779 2.669 -0.49
23 H62 H H62 N N N 0 -2.566 2.414 1.259
24 HO2 H HO2 N N Y 0 0.473 -3.079 1.297
25 HO3 H HO3 N N Y 0 -2.414 -3.244 -0.555
26 HO4 H HO4 N N Y 0 -3.988 -0.316 -1.42
27 HO6 H HO6 N N Y 0 -1.415 4.364 0.497
28 HOP2 H HOP2 N N N 0 3.413 -1.8 0.264
29 HOP3 H HOP3 N N N 0 3.937 0.473 -1.863