Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : G5J

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C1 N N N 0 -6.981 -1.89 -1.105
2 N2 N N1 N N N 0 -7.828 -1.849 -2.18
3 C4 C C2 N Y N 0 -5.071 -1.025 0.001
4 C5 C C3 N Y N 0 -5.264 -1.95 1.02
5 C6 C C4 N N N 0 -6.399 -2.871 0.912
6 O6 O O1 N N N 0 -6.612 -3.703 1.781
7 O2' O O2 N N N 0 -5.039 2.495 -0.996
8 O3' O O3 N N N 0 -3.114 4.16 -1.073
9 O4' O O4 N N N 0 -1.982 0.949 -0.097
10 O5' O O5 N N N 0 0.735 1.994 -0.19
11 C1' C C5 R N N 0 -3.378 0.792 -0.433
12 C2' C C6 R N N 0 -4.031 2.138 -0.048
13 C3' C C7 S N N 0 -2.862 3.148 -0.095
14 C3G C C8 N N N 0 7.007 -4.041 -1.776
15 C4' C C9 R N N 0 -1.642 2.293 -0.503
16 C5' C C10 N N N 0 -0.388 2.77 0.232
17 C8 C C11 N Y N 0 -3.513 -0.785 1.533
18 N1 N N2 N N N 0 -7.199 -2.781 -0.162
19 N3 N N3 N N N 0 -5.945 -1.012 -1.055
20 N7 N N4 N Y N 0 -4.281 -1.758 1.931
21 N9 N N5 N Y N 0 -3.968 -0.303 0.341
22 O1A O O6 N N N 0 2.749 3.68 -0.064
23 O1B O O7 N N N 0 5.789 1.576 -0.133
24 O1G O O8 N N N 0 7.212 -1.626 0.197
25 O2A O O9 N N N 0 2.205 2.135 1.857
26 O2B O O10 N N N 0 4.637 0.266 1.692
27 O2G O O11 N N N 0 5.254 -3.089 0.828
28 O3A O O12 N N N 0 3.206 1.095 -0.214
29 O3B O O13 N N N 0 4.92 -0.871 -0.544
30 O3G O O14 N N N 0 6.107 -2.937 -1.655
31 PA P P1 N N N 0 2.224 2.224 0.38
32 PB P P2 N N N 0 4.638 0.511 0.232
33 PG P P3 N N N 0 5.902 -2.12 -0.283
34 H1 H H1 N N N 0 -8.571 -2.47 -2.236
35 H2 H H2 N N N 0 -7.684 -1.199 -2.886
36 H3 H H3 N N N 0 -5.482 3.332 -0.803
37 H4 H H4 N N N 0 -3.905 4.688 -0.898
38 H5 H H5 N N N 0 -3.493 0.606 -1.501
39 H6 H H6 N N N 0 -4.452 2.085 0.955
40 H7 H H7 N N N 0 -2.706 3.597 0.886
41 H8 H H8 N N N 0 8.02 -3.71 -1.549
42 H9 H H9 N N N 0 6.715 -4.826 -1.078
43 H10 H H10 N N N 0 6.971 -4.428 -2.795
44 H11 H H11 N N N 0 -1.491 2.337 -1.581
45 H12 H H12 N N N 0 -0.529 2.65 1.306
46 H13 H H13 N N N 0 -0.211 3.821 0.004
47 H14 H H14 N N N 0 -2.648 -0.416 2.064
48 H15 H H15 N N N 0 -5.823 -0.371 -1.773
49 H16 H H16 N N N 0 2.787 3.81 -1.021
50 H17 H H17 N N N 0 5.847 1.785 -1.075
51 H18 H H18 N N N 0 4.392 -3.451 0.58