Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G6G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 83


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -10.062 -1.707 -0.803
2 C2 C C2 N Y N 0 -11.257 -1.056 -1.037
3 C6 C C6 N Y N 0 -9.049 -1.067 -0.101
4 C3 C C3 N Y N 0 -11.445 0.238 -0.572
5 C4 C C4 N Y N 0 -10.433 0.878 0.128
6 C5 C C5 N Y N 0 -9.238 0.228 0.363
7 C8 C C8 N N N 0 -12.747 2.208 -0.297
8 C10 C C10 N Y N 0 -6.652 -1.017 0.133
9 C12 C C12 N Y N 0 -4.358 -0.963 0.3
10 C14 C C14 N Y N 0 -5.532 0.981 -0.06
11 C41 C C41 N N N 0 11.068 -1.725 -0.61
12 C42 C C42 N N N 0 11.909 -1.556 0.657
13 N43 N N43 N N N 0 12.238 -0.135 0.837
14 C46 C C46 N N N 0 13.109 0.06 2.004
15 C44 C C44 N N N 0 11.017 0.675 0.951
16 C45 C C45 N N N 0 10.176 0.506 -0.317
17 N40 N N40 N N N 0 9.847 -0.915 -0.497
18 C39 C C39 N N N 0 8.976 -1.11 -1.663
19 C36 C C36 N Y N 0 7.638 -0.465 -1.404
20 C37 C C37 N Y N 0 7.43 0.856 -1.759
21 C38 C C38 N Y N 0 6.208 1.452 -1.525
22 C35 C C35 N Y N 0 6.622 -1.199 -0.818
23 C34 C C34 N Y N 0 5.395 -0.615 -0.579
24 C32 C C32 N Y N 0 5.18 0.719 -0.929
25 C31 C C31 N N N 0 3.868 1.351 -0.676
26 O33 O O33 N N N 0 3.683 2.512 -0.986
27 N30 N N30 N N N 0 2.878 0.641 -0.101
28 C25 C C25 N Y N 0 1.674 1.267 0.239
29 C24 C C24 N Y N 0 0.489 0.546 0.228
30 C26 C C26 N Y N 0 1.666 2.61 0.594
31 C27 C C27 N Y N 0 0.477 3.23 0.93
32 C28 C C28 N Y N 0 -0.706 2.516 0.914
33 C21 C C21 N Y N 0 -1.874 -0.936 0.617
34 C29 C C29 N N N 0 -2.0 3.196 1.281
35 C23 C C23 N Y N 0 -0.703 1.171 0.566
36 N22 N N22 N N N 0 -1.9 0.449 0.555
37 N20 N N20 N Y N 0 -0.723 -1.565 0.798
38 C19 C C19 N Y N 0 -0.654 -2.881 0.864
39 C18 C C18 N Y N 0 -1.788 -3.663 0.746
40 C17 C C17 N Y N 0 -3.018 -3.056 0.557
41 C16 C C16 N Y N 0 -3.068 -1.662 0.495
42 N11 N N11 N Y N 0 -5.497 -1.65 0.309
43 N13 N N13 N Y N 0 -4.381 0.357 0.114
44 N15 N N15 N Y N 0 -6.665 0.301 -0.051
45 N9 N N9 N N N 0 -7.836 -1.727 0.137
46 O7 O O7 N N N 0 -12.622 0.878 -0.804
47 H5 H H5 N N N 0 -8.45 0.727 0.908
48 H1 H H1 N N N 0 -9.917 -2.715 -1.161
49 H2 H H2 N N N 0 -12.045 -1.554 -1.582
50 H4 H H4 N N N 0 -10.581 1.885 0.49
51 H8 H H8 N N N 0 -11.977 2.84 -0.74
52 H8A H H8A N N N 0 -13.731 2.603 -0.55
53 H8B H H8B N N N 0 -12.628 2.197 0.787
54 H14 H H14 N N N 0 -5.547 2.051 -0.21
55 H41 H H41 N N N 0 11.643 -1.396 -1.475
56 H41A H H41A N N N 0 10.798 -2.774 -0.73
57 H42 H H42 N N N 0 11.343 -1.91 1.519
58 H42A H H42A N N N 0 12.829 -2.133 0.563
59 H46 H H46 N N N 0 14.035 -0.498 1.863
60 H46A H H46A N N N 0 13.338 1.12 2.114
61 H46B H H46B N N N 0 12.602 -0.297 2.9
62 H44 H H44 N N N 0 10.442 0.347 1.816
63 H44A H H44A N N N 0 11.287 1.725 1.071
64 H45 H H45 N N N 0 9.256 1.083 -0.222
65 H45A H H45A N N N 0 10.742 0.86 -1.179
66 H39 H H39 N N N 0 9.435 -0.654 -2.54
67 H39A H H39A N N N 0 8.837 -2.176 -1.839
68 H37 H H37 N N N 0 8.226 1.422 -2.219
69 H38 H H38 N N N 0 6.047 2.484 -1.802
70 H35 H H35 N N N 0 6.789 -2.231 -0.548
71 H34 H H34 N N N 0 4.603 -1.189 -0.121
72 HN30 H HN30 N N N 0 3.0 -0.305 0.078
73 H24 H H24 N N N 0 0.494 -0.499 -0.044
74 H29A H H29A N N N 0 -2.679 2.468 1.725
75 H26 H H26 N N N 0 2.589 3.171 0.608
76 H27 H H27 N N N 0 0.473 4.274 1.206
77 H29 H H29 N N N 0 -2.455 3.619 0.386
78 H29B H H29B N N N 0 -1.801 3.992 1.998
79 HN22 H HN22 N N N 0 -2.748 0.916 0.503
80 H19 H H19 N N N 0 0.305 -3.355 1.011
81 H18 H H18 N N N 0 -1.714 -4.739 0.802
82 HN9 H HN9 N N N 0 -7.829 -2.682 0.304
83 H17 H H17 N N N 0 -3.918 -3.647 0.462