Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : G6Y

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -5.44 -1.069 0.215
2 C5 C C2 N Y N 0 -4.301 -0.367 -0.179
3 C6 C C3 N Y N 0 -4.342 0.338 -1.399
4 N1 N N1 N Y N 0 -5.456 0.307 -2.12
5 N3 N N2 N Y N 0 -6.51 -1.048 -0.563
6 CBE C C4 N N N 0 -4.969 -3.274 1.247
7 CBD C C5 N N N 0 -5.45 -1.845 1.507
8 C2 C C6 N Y N 0 -6.513 -0.374 -1.704
9 NAG N N3 N N N 0 -7.655 -0.382 -2.484
10 NAH N N4 N N N 0 -3.24 1.051 -1.837
11 CAI C C7 N N N 0 -3.122 -0.363 0.634
12 CAJ C C8 N N N 0 -2.155 -0.359 1.3
13 CAK C C9 R N N 0 -0.944 -0.355 2.136
14 CBC C C10 N N N 0 -1.272 0.239 3.507
15 CAL C C11 N Y N 0 0.122 0.477 1.47
16 CAM C C12 N Y N 0 1.327 -0.098 1.123
17 CAQ C C13 N Y N 0 -0.112 1.814 1.205
18 CAP C C14 N Y N 0 0.865 2.586 0.591
19 OAX O O1 N N N 0 0.629 3.899 0.332
20 CAY C C15 N N N 0 1.679 4.633 -0.301
21 CAO C C16 N Y N 0 2.08 2.018 0.244
22 CAN C C17 N Y N 0 2.315 0.67 0.507
23 CAR C C18 N Y N 0 3.611 0.055 0.132
24 CAS C C19 N Y N 0 3.841 -1.297 0.391
25 CAT C C20 N Y N 0 5.043 -1.87 0.043
26 CAU C C21 N Y N 0 6.034 -1.097 -0.569
27 CAZ C C22 N N N 0 7.323 -1.71 -0.942
28 OBB O O2 N N N 0 7.524 -2.887 -0.718
29 OBA O O3 N N N 0 8.278 -0.964 -1.533
30 CAV C C23 N Y N 0 5.802 0.257 -0.827
31 CAW C C24 N Y N 0 4.596 0.826 -0.484
32 H1 H H1 N N N 0 -5.632 -3.756 0.528
33 H2 H H2 N N N 0 -3.955 -3.249 0.846
34 H3 H H3 N N N 0 -4.976 -3.836 2.181
35 H4 H H4 N N N 0 -4.787 -1.364 2.225
36 H5 H H5 N N N 0 -6.463 -1.871 1.908
37 H6 H H6 N N N 0 -7.674 0.106 -3.322
38 H7 H H7 N N N 0 -8.438 -0.876 -2.194
39 H8 H H8 N N N 0 -3.278 1.534 -2.677
40 H9 H H9 N N N 0 -2.43 1.068 -1.303
41 H10 H H10 N N N 0 -0.583 -1.376 2.259
42 H11 H H11 N N N 0 -1.632 1.26 3.384
43 H12 H H12 N N N 0 -2.043 -0.363 3.988
44 H13 H H13 N N N 0 -0.375 0.242 4.126
45 H14 H H14 N N N 0 1.506 -1.143 1.329
46 H15 H H15 N N N 0 -1.059 2.258 1.475
47 H16 H H16 N N N 0 2.568 4.614 0.33
48 H17 H H17 N N N 0 1.909 4.181 -1.266
49 H18 H H18 N N N 0 1.362 5.665 -0.451
50 H19 H H19 N N N 0 2.841 2.618 -0.233
51 H20 H H20 N N N 0 3.075 -1.894 0.864
52 H21 H H21 N N N 0 5.221 -2.916 0.244
53 H22 H H22 N N N 0 9.106 -1.41 -1.759
54 H23 H H23 N N N 0 6.566 0.855 -1.3
55 H24 H H24 N N N 0 4.415 1.871 -0.688