Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : GAH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 116


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -5.198 -1.918 -1.978
2 C6 C C6 N N N 0 -6.479 -2.703 -1.691
3 C7 C C7 N N N 0 -6.12 -4.063 -1.088
4 N8 N N8 N N N 0 -7.338 -4.86 -0.923
5 C9 C C9 N N N 0 -7.263 -6.128 -0.396
6 N11 N N11 N N N 0 -8.347 -6.838 -0.249
7 N10 N N10 N N N 0 -6.046 -6.647 -0.023
8 C5 C C5 N N N 0 -7.345 -1.92 -0.702
9 C4 C C4 N N N 0 -7.704 -0.56 -1.304
10 C3 C C3 N N N 0 -6.423 0.225 -1.592
11 C12 C C12 N N N 0 -5.66 0.429 -0.309
12 O13 O O13 N N N 0 -6.098 -0.009 0.734
13 C2 C C2 N N N 0 -5.556 -0.559 -2.581
14 C18 C C18 N N N 0 -4.48 3.774 0.594
15 C23 C C23 N N N 0 -5.419 4.868 1.109
16 C22 C C22 N N N 0 -5.454 6.023 0.106
17 C21 C C21 N N N 0 -4.045 6.597 -0.06
18 C20 C C20 N N N 0 -3.107 5.504 -0.575
19 C19 C C19 N N N 0 -3.072 4.348 0.428
20 N14 N N14 N N N 0 -4.49 1.099 -0.319
21 C15 C C15 R N N 0 -3.804 1.394 0.941
22 C16 C C16 N N N 0 -4.445 2.619 1.597
23 C17 C C17 N N N 0 -2.349 1.675 0.667
24 O24 O O24 N N N 0 -1.931 1.65 -0.472
25 N25 N N25 N N N 0 -1.513 1.955 1.686
26 C28 C C28 S N N 0 -0.084 2.272 1.826
27 C29 C C29 N N N 0 0.8 1.489 0.89
28 O30 O O30 N N N 0 0.31 0.689 0.121
29 C27 C C27 N N N 0 -0.148 1.684 3.243
30 C26 C C26 N N N 0 -1.629 2.084 3.146
31 N31 N N31 N N N 0 2.135 1.676 0.908
32 C32 C C32 R N N 0 2.993 0.915 -0.002
33 C41 C C41 N N N 0 4.269 1.679 -0.246
34 O42 O O42 N N N 0 4.444 2.754 0.288
35 C33 C C33 N N N 0 3.323 -0.442 0.624
36 C34 C C34 N Y N 0 2.061 -1.255 0.755
37 C39 C C39 N Y N 0 1.666 -2.086 -0.276
38 C35 C C35 N Y N 0 1.304 -1.172 1.909
39 C38 C C38 N Y N 0 0.509 -2.832 -0.159
40 C36 C C36 N Y N 0 0.143 -1.912 2.029
41 C37 C C37 N Y N 0 -0.256 -2.747 0.996
42 O40 O O40 N N N 0 -1.394 -3.48 1.114
43 N43 N N43 N N N 0 5.216 1.167 -1.057
44 C44 C C44 S N N 0 6.457 1.91 -1.295
45 C48 C C48 N N N 0 7.568 0.935 -1.687
46 C50 C C50 N N N 0 8.983 -0.969 -0.901
47 C49 C C49 N N N 0 7.871 0.007 -0.509
48 C51 C C51 N N N 0 9.286 -1.897 0.277
49 N52 N N52 N N N 0 10.351 -2.831 -0.099
50 C53 C C53 N N N 0 10.794 -3.767 0.805
51 N55 N N55 N N N 0 10.268 -3.823 1.997
52 N54 N N54 N N N 0 11.793 -4.643 0.453
53 C45 C C45 N N N 0 6.242 2.902 -2.409
54 O46 O O46 N N N 0 5.161 2.981 -2.951
55 N47 N N47 N N N 0 7.253 3.702 -2.802
56 H11A H H11A N N N 0 -4.646 -1.77 -1.05
57 H12 H H12 N N N 0 -4.581 -2.476 -2.683
58 H6 H H6 N N N 0 -7.031 -2.851 -2.619
59 H71 H H71 N N N 0 -5.432 -4.584 -1.753
60 H72 H H72 N N N 0 -5.648 -3.917 -0.117
61 HN8 H HN8 N N N 0 -8.197 -4.494 -1.186
62 H11 H H11 N N N 0 -8.294 -7.732 0.123
63 H101 H H101 N N N 0 -5.24 -6.119 -0.133
64 H102 H H102 N N N 0 -5.993 -7.541 0.348
65 H51 H H51 N N N 0 -8.258 -2.479 -0.497
66 H52A H H52A N N N 0 -6.794 -1.772 0.227
67 H41 H H41 N N N 0 -8.256 -0.708 -2.233
68 H42 H H42 N N N 0 -8.321 -0.002 -0.6
69 H3 H H3 N N N 0 -6.678 1.193 -2.021
70 H21 H H21 N N N 0 -4.643 0.0 -2.786
71 H22 H H22 N N N 0 -6.108 -0.707 -3.509
72 H18 H H18 N N N 0 -4.84 3.41 -0.368
73 H231 H H231 N N N 0 -6.422 4.459 1.227
74 H232 H H232 N N N 0 -5.059 5.232 2.071
75 H221 H H221 N N N 0 -5.813 5.659 -0.856
76 H222 H H222 N N N 0 -6.122 6.802 0.473
77 H211 H H211 N N N 0 -4.07 7.42 -0.774
78 H212 H H212 N N N 0 -3.685 6.961 0.902
79 H201 H H201 N N N 0 -3.466 5.139 -1.537
80 H202 H H202 N N N 0 -2.103 5.912 -0.693
81 H191 H H191 N N N 0 -2.712 4.713 1.39
82 H192 H H192 N N N 0 -2.403 3.569 0.061
83 H14 H H14 N N N 0 -4.104 1.387 -1.161
84 H15 H H15 N N N 0 -3.889 0.538 1.61
85 H161 H H161 N N N 0 -5.461 2.375 1.906
86 H162 H H162 N N N 0 -3.86 2.912 2.469
87 H28 H H28 N N N 0 0.127 3.342 1.809
88 H271 H H271 N N N 0 0.026 0.609 3.288
89 H272 H H272 N N N 0 0.417 2.246 3.986
90 H261 H H261 N N N 0 -1.826 3.104 3.478
91 H262 H H262 N N N 0 -2.307 1.357 3.593
92 H31 H H31 N N N 0 2.526 2.316 1.523
93 H32 H H32 N N N 0 2.475 0.762 -0.948
94 H331 H H331 N N N 0 4.033 -0.972 -0.011
95 H332 H H332 N N N 0 3.762 -0.29 1.61
96 H39 H H39 N N N 0 2.261 -2.153 -1.175
97 H35 H H35 N N N 0 1.617 -0.526 2.715
98 H38 H H38 N N N 0 0.2 -3.481 -0.965
99 H36 H H36 N N N 0 -0.451 -1.844 2.929
100 H40 H H40 N N N 0 -1.26 -4.355 1.504
101 H43 H H43 N N N 0 5.077 0.308 -1.484
102 H44 H H44 N N N 0 6.742 2.44 -0.386
103 H481 H H481 N N N 0 7.246 0.342 -2.543
104 H482 H H482 N N N 0 8.466 1.494 -1.949
105 H501 H H501 N N N 0 8.661 -1.561 -1.757
106 H502 H H502 N N N 0 9.881 -0.41 -1.164
107 H491 H H491 N N N 0 8.193 0.6 0.347
108 H492 H H492 N N N 0 6.973 -0.552 -0.246
109 H511 H H511 N N N 0 9.608 -1.304 1.133
110 H512 H H512 N N N 0 8.388 -2.456 0.539
111 H52 H H52 N N N 0 10.742 -2.789 -0.985
112 H55 H H55 N N N 0 10.581 -4.483 2.634
113 H541 H H541 N N N 0 12.185 -4.601 -0.433
114 H542 H H542 N N N 0 12.106 -5.303 1.091
115 H471 H H471 N N N 0 8.119 3.639 -2.368
116 H472 H H472 N N N 0 7.116 4.34 -3.519