Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GD1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 20


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O6 O O6 N N N 0 -0.474 -2.188 -0.002
2 C6 C C6 N N N 0 0.216 -1.184 -0.003
3 C5 C C5 N Y N 0 -0.371 0.097 -0.001
4 C7 C C7 N Y N 0 -1.754 0.6 0.001
5 C77 C C77 N N N 0 -2.985 -0.205 0.002
6 N77 N N77 N N N 0 -2.913 -1.499 0.002
7 N1 N N1 N N N 0 1.566 -1.269 0.0
8 C2 C C2 N N N 0 2.323 -0.135 0.0
9 N2 N N2 N N N 0 3.69 -0.25 0.004
10 N3 N N3 N N N 0 1.785 1.063 -0.003
11 C4 C C4 N Y N 0 0.454 1.227 -0.002
12 N9 N N9 N Y N 0 -0.355 2.329 0.0
13 C8 C C8 N Y N 0 -1.666 1.959 0.001
14 H1 H H1 N N N 0 -3.948 0.283 0.004
15 H2 H H2 N N N 0 -3.725 -2.03 0.003
16 H3 H H3 N N N 0 1.996 -2.138 0.003
17 H4 H H4 N N N 0 4.104 -1.127 0.006
18 H5 H H5 N N N 0 4.244 0.547 0.004
19 H6 H H6 N N N 0 -0.04 3.246 0.0
20 H7 H H7 N N N 0 -2.505 2.639 0.002