Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GDA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 -0.702 1.391 0.268
2 C2 C C2 R N N 0 -1.602 0.255 -0.227
3 C3 C C3 S N N 0 -1.027 -1.084 0.247
4 C4 C C4 S N N 0 0.412 -1.218 -0.261
5 C5 C C5 S N N 0 1.233 -0.025 0.235
6 C6 C C6 N N N 0 2.656 -0.121 -0.318
7 N4 N N4 N N N 0 0.998 -2.465 0.249
8 O2 O O2 N N N 0 -2.919 0.424 0.301
9 O3 O O3 N N N 0 -1.819 -2.154 -0.271
10 O5 O O5 N N N 0 0.627 1.188 -0.215
11 O6 O O6 N N N 0 3.454 0.928 0.236
12 O1 O O1 N N Y 0 -1.201 2.639 -0.218
13 H1 H H1 N N N 0 -0.696 1.401 1.358
14 H2 H H2 N N N 0 -1.641 0.269 -1.316
15 H3 H H3 N N N 0 -1.035 -1.119 1.337
16 H4 H H4 N N N 0 0.413 -1.234 -1.351
17 H5 H H5 N N N 0 1.265 -0.034 1.325
18 H61 H H6 N N N 0 3.087 -1.086 -0.049
19 H62 H H7 N N N 0 2.632 -0.024 -1.403
20 H8 H H8 N N N 0 0.469 -3.267 -0.062
21 H9 H H9 N N N 0 1.967 -2.545 -0.02
22 HO2 H H11 N N Y 0 -3.342 1.255 0.043
23 HO3 H H12 N N Y 0 -2.746 -2.128 0.005
24 HO6 H H13 N N Y 0 4.371 0.928 -0.071
25 HO1 H H14 N N Y 0 -0.679 3.405 0.058