Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GDI

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -3.393 -2.373 1.133
2 C2 C C2 N N N 0 -4.93 -3.857 -0.065
3 C3 C C3 N N N 0 -3.578 -3.745 0.643
4 C4 C C4 S N N 0 -3.384 -1.41 0.024
5 C5 C C5 N N N 0 -4.73 -1.453 -0.702
6 C6 C C6 N N N 0 -4.973 -2.868 -1.233
7 C7 C C7 N N N 0 -3.149 -0.023 0.565
8 O8 O O8 N N N 0 -3.362 0.215 1.735
9 N9 N N9 N N N 0 -2.703 0.952 -0.251
10 C10 C C10 S N N 0 -2.475 2.3 0.276
11 C11 C C11 N N N 0 -3.768 3.073 0.255
12 C12 C C12 N N N 0 -1.438 3.017 -0.591
13 C13 C C13 N Y N 0 -0.111 2.313 -0.473
14 C14 C C14 N Y N 0 0.206 1.289 -1.347
15 C15 C C15 N Y N 0 1.42 0.641 -1.243
16 C16 C C16 N Y N 0 2.328 1.02 -0.256
17 C17 C C17 N Y N 0 2.003 2.053 0.622
18 C18 C C18 N Y N 0 0.789 2.698 0.506
19 C19 C C19 N Y N 0 3.633 0.327 -0.139
20 C20 C C20 N Y N 0 4.539 0.709 0.851
21 C21 C C21 N Y N 0 3.952 -0.711 -1.016
22 C22 C C22 N Y N 0 5.752 0.067 0.96
23 C23 C C23 N Y N 0 5.164 -1.355 -0.908
24 C24 C C24 N Y N 0 6.075 -0.969 0.079
25 C25 C C25 N N N 0 7.336 -1.638 0.191
26 N26 N N26 N N N 0 8.337 -2.168 0.28
27 N27 N N27 N N N 0 -4.836 2.521 -0.182
28 H11 H H11 N N N 0 -3.793 4.093 0.609
29 H1 H H1 N N N 0 -4.099 -2.134 1.813
30 H31C H H31C N N N 0 -2.78 -3.991 -0.058
31 H32C H H32C N N N 0 -3.55 -4.438 1.484
32 H4 H H4 N N N 0 -2.586 -1.667 -0.674
33 H21C H H21C N N N 0 -5.061 -4.872 -0.442
34 H22C H H22C N N N 0 -5.73 -3.625 0.638
35 H61C H H61C N N N 0 -4.199 -3.124 -1.956
36 H62C H H62C N N N 0 -5.951 -2.914 -1.714
37 H51C H H51C N N N 0 -5.526 -1.182 -0.009
38 H52C H H52C N N N 0 -4.717 -0.749 -1.535
39 H9 H H9 N N N 0 -2.533 0.762 -1.186
40 H10 H H10 N N N 0 -2.108 2.233 1.3
41 H121 H H121 N N N 0 -1.764 3.006 -1.631
42 H122 H H122 N N N 0 -1.333 4.049 -0.254
43 H27 H H27 N N N 0 -5.669 3.018 -0.195
44 H14 H H14 N N N 0 -0.498 0.996 -2.112
45 H18 H H18 N N N 0 0.538 3.501 1.182
46 H15 H H15 N N N 0 1.666 -0.159 -1.926
47 H17 H H17 N N N 0 2.702 2.351 1.39
48 H20 H H20 N N N 0 4.289 1.509 1.531
49 H21 H H21 N N N 0 3.248 -1.009 -1.778
50 H22 H H22 N N N 0 6.453 0.363 1.725
51 H23 H H23 N N N 0 5.411 -2.158 -1.587