Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GFP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 0.205 -0.533 0.777
2 C2 C C2 R N N 0 -0.909 -1.581 0.723
3 C3 C C3 S N N 0 -1.925 -1.175 -0.35
4 C4 C C4 S N N 0 -2.39 0.258 -0.066
5 C5 C C5 R N N 0 -1.165 1.167 0.046
6 C6 C C6 N N N 0 -1.62 2.606 0.295
7 O1 O O1 N N N 0 0.832 -0.441 -0.504
8 O3 O O3 N N N 0 -3.044 -2.062 -0.311
9 O4 O O4 N N N 0 -3.225 0.71 -1.134
10 O5 O O5 N N N 0 -0.343 0.736 1.129
11 O6 O O6 N N N 0 -0.485 3.474 0.281
12 F2 F F2 N N N 0 -0.362 -2.829 0.404
13 P P P N N N 0 2.365 -0.026 -0.243
14 O1P O O1P N N N 0 2.41 1.214 0.564
15 O2P O O2P N N N 0 3.114 -1.21 0.551
16 O3P O O3P N N N 0 3.101 0.224 -1.653
17 H1 H H1 N N N 0 0.944 -0.828 1.522
18 H2 H H2 N N N 0 -1.405 -1.637 1.692
19 H3 H H3 N N N 0 -1.457 -1.22 -1.333
20 H4 H H4 N N N 0 -2.95 0.281 0.869
21 H5 H H5 N N N 0 -0.594 1.123 -0.881
22 H61 H H61 N N N 0 -2.113 2.669 1.265
23 H62 H H62 N N N 0 -2.317 2.907 -0.487
24 HO3 H HO3 N N Y 0 -2.703 -2.951 -0.482
25 HO4 H HO4 N N Y 0 -3.979 0.107 -1.174
26 HO6 H HO6 N N Y 0 -0.815 4.369 0.441
27 HOP2 H HOP2 N N N 0 3.062 -1.997 -0.008
28 HOP3 H HOP3 N N N 0 4.014 0.47 -1.452