Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GG9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 1.906 -2.433 -0.071
2 C2 C C2 N N N 0 2.857 -1.548 0.141
3 C3 C C3 R N N 0 2.641 -0.246 0.856
4 C4 C C4 S N N 0 1.333 -0.291 1.649
5 C5 C C5 R N N 0 0.219 -0.79 0.72
6 C6 C C6 N N N 0 0.485 -2.255 0.379
7 C7 C C7 N N N 0 2.255 -3.664 -0.794
8 O1 O O1 N N N 0 2.58 0.815 -0.099
9 O2 O O2 N N N 0 1.013 1.018 2.122
10 O3 O O3 N N N 0 -1.044 -0.671 1.379
11 O4 O O4 N N N 0 3.394 -3.841 -1.179
12 O5 O O5 N N N 0 1.311 -4.596 -1.032
13 P1 P P1 N N N 0 3.607 2.055 -0.099
14 O6 O O6 N N N 0 3.327 2.984 -1.384
15 O7 O O7 N N N 0 3.403 2.921 1.243
16 O8 O O8 N N N 0 4.995 1.546 -0.151
17 C8 C C8 R N N 0 -2.115 -0.282 0.517
18 C9 C C9 N N N 0 -3.38 -0.054 1.347
19 C10 C C10 N N N 0 -2.367 -1.37 -0.494
20 O9 O O9 N N N 0 -2.171 -1.161 -1.668
21 O10 O O10 N N N 0 -2.809 -2.572 -0.091
22 P2 P P2 N N N 0 -2.741 1.655 -1.214
23 O11 O O11 N N N 0 -4.051 1.916 -0.575
24 O12 O O12 N N N 0 -2.95 0.705 -2.497
25 O13 O O13 N N N 0 -2.084 3.049 -1.68
26 O14 O O14 N N N 0 -1.766 0.927 -0.161
27 F1 F F1 N N N 0 -3.676 -1.212 2.074
28 F2 F F2 N N N 0 -3.173 1.012 2.23
29 H2 H H2 N N N 0 3.85 -1.771 -0.221
30 H3 H H3 N N N 0 3.47 -0.068 1.541
31 H4 H H4 N N N 0 1.439 -0.973 2.492
32 H5 H H5 N N N 0 0.214 -0.199 -0.196
33 H61 H 1H6 N N N 0 -0.188 -2.571 -0.417
34 H62 H 2H6 N N N 0 0.307 -2.867 1.264
35 HO2 H HO2 N N N 0 1.684 1.401 2.704
36 HO5 H HO5 N N N 0 1.587 -5.389 -1.511
37 HO6 H HO6 N N N 0 3.91 3.752 -1.449
38 HO7 H HO7 N N N 0 2.514 3.287 1.344
39 H9 H H9 N N N 0 -4.213 0.181 0.683
40 HO10 H HO10 N N N 0 -2.955 -3.238 -0.776
41 HO12 H HO12 N N N 0 -2.132 0.492 -2.966
42 HO13 H HO13 N N N 0 -2.619 3.543 -2.316