Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : GGD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 161


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CA1 C CA1 R N N 0 -7.268 7.359 -6.038
2 CA2 C CA2 R N N 0 -8.069 8.554 -5.514
3 CA3 C CA3 S N N 0 -8.954 9.137 -6.615
4 CA4 C CA4 S N N 0 -8.147 9.402 -7.886
5 CA5 C CA5 R N N 0 -7.387 8.134 -8.292
6 CA6 C CA6 N N N 0 -6.499 8.339 -9.513
7 OA1 O OA1 N N N 0 -6.372 6.898 -5.038
8 OA2 O OA2 N N N 0 -8.89 8.108 -4.435
9 OA4 O OA4 N N N 0 -7.226 10.463 -7.627
10 OA5 O OA5 N N N 0 -6.542 7.708 -7.215
11 OA6 O OA6 N N N 0 -5.835 7.121 -9.799
12 OB6 O OB6 N N N 0 -10.862 11.314 -10.681
13 CB1 C CB1 S N N 0 -10.836 10.54 -6.719
14 CB2 C CB2 R N N 0 -11.683 11.316 -5.71
15 CB3 C CB3 S N N 0 -13.038 11.704 -6.302
16 CB4 C CB4 S N N 0 -12.876 12.342 -7.682
17 CB5 C CB5 R N N 0 -11.976 11.483 -8.575
18 CB6 C CB6 N N N 0 -11.705 12.157 -9.917
19 OB1 O OB1 N N N 0 -9.551 10.343 -6.148
20 OB2 O OB2 N N N 0 -11.89 10.518 -4.545
21 OB3 O OB3 N N N 0 -13.69 12.626 -5.428
22 OB4 O OB4 N N N 0 -14.157 12.475 -8.292
23 OB5 O OB5 N N N 0 -10.716 11.271 -7.937
24 CC3 C CC3 N N N 0 -5.611 5.785 -5.495
25 CC4 C CC4 N N N 0 -4.629 5.35 -4.412
26 OC6 O OC6 N N N 0 -5.366 5.011 -3.234
27 CC5 C CC5 N N N 0 -6.268 3.999 -3.377
28 OC7 O OC7 N N N 0 -6.178 3.057 -4.155
29 CC6 C CC6 N N N 0 -3.661 6.47 -4.056
30 OC8 O OC8 N N N 0 -2.79 6.018 -3.025
31 CC7 C CC7 N N N 0 -1.858 6.92 -2.595
32 OC9 O OC9 N N N 0 -1.713 8.06 -3.014
33 C14 C C14 N N N 0 -7.415 4.186 -2.413
34 C15 C C15 N N N 0 -8.427 3.048 -2.517
35 C16 C C16 N N N 0 -9.586 3.215 -1.532
36 C17 C C17 N N N 0 -10.569 2.046 -1.621
37 C18 C C18 N N N 0 -11.738 2.236 -0.654
38 C19 C C19 N N N 0 -12.738 1.081 -0.755
39 C20 C C20 N N N 0 -13.912 1.22 0.221
40 C21 C C21 N N N 0 -14.985 0.133 0.093
41 C22 C C22 N N N 0 -15.582 0.052 -1.283
42 C23 C C23 N N N 0 -15.67 -1.03 -2.071
43 C24 C C24 N N N 0 -16.269 -1.101 -3.446
44 C31 C C31 N N N 0 -1.004 6.311 -1.509
45 C32 C C32 N N N 0 0.025 7.298 -0.965
46 C33 C C33 N N N 0 0.936 6.663 0.091
47 C34 C C34 N N N 0 1.976 7.635 0.658
48 C35 C C35 N N N 0 2.878 7.071 1.761
49 C36 C C36 N N N 0 3.861 8.101 2.327
50 C37 C C37 N N N 0 4.764 7.532 3.427
51 C38 C C38 N N N 0 3.995 6.941 4.575
52 C39 C C39 N N N 0 4.055 5.647 4.922
53 C40 C C40 N N N 0 3.304 5.059 6.082
54 C41 C C41 N N N 0 2.356 3.922 5.682
55 C42 C C42 N N N 0 1.267 4.359 4.695
56 C43 C C43 N N N 0 0.369 3.183 4.304
57 C44 C C44 N N N 0 -0.683 3.542 3.25
58 C25 C C25 N N N 0 -15.269 -1.635 -4.471
59 C26 C C26 N N N 0 -14.044 -0.733 -4.657
60 C27 C C27 N N N 0 -14.319 0.677 -5.191
61 C28 C C28 N N N 0 -13.051 1.5 -5.431
62 C29 C C29 N N N 0 -13.385 2.862 -6.044
63 C30 C C30 N N N 0 -12.154 3.741 -6.274
64 C48 C C48 N N N 0 -12.487 5.103 -6.864
65 C45 C C45 N N N 0 -1.557 2.385 2.755
66 C46 C C46 N N N 0 -2.543 2.791 1.66
67 C47 C C47 N N N 0 -3.446 1.632 1.267
68 HA11 H 1HA1 N N N 0 -7.93 6.515 -6.263
69 HA21 H 1HA2 N N N 0 -7.4 9.324 -5.111
70 HA31 H 1HA3 N N N 0 -9.773 8.439 -6.829
71 HA41 H 1HA4 N N N 0 -8.814 9.74 -8.687
72 HA51 H 1HA5 N N N 0 -8.099 7.33 -8.517
73 HA61 H 1HA6 N N N 0 -5.758 9.113 -9.311
74 HA62 H 2HA6 N N N 0 -7.106 8.628 -10.372
75 HO21 H 1HO2 N N N 0 -9.568 8.789 -4.307
76 HO41 H 1HO4 N N N 0 -7.351 11.112 -8.335
77 HO61 H 1HO6 N N N 0 -4.888 7.325 -9.878
78 HO6 H HO6 N N N 0 -10.427 11.874 -11.347
79 HB11 H 1HB1 N N N 0 -11.264 9.549 -6.914
80 HB21 H 1HB2 N N N 0 -11.147 12.214 -5.378
81 HB31 H 1HB3 N N N 0 -13.698 10.83 -6.362
82 HB41 H 1HB4 N N N 0 -12.454 13.349 -7.575
83 HB51 H 1HB5 N N N 0 -12.448 10.513 -8.779
84 HB61 H 1HB6 N N N 0 -11.21 13.115 -9.759
85 HB62 H 2HB6 N N N 0 -12.642 12.311 -10.452
86 HO2 H HO2 N N N 0 -12.385 9.736 -4.833
87 HO3 H HO3 N N N 0 -14.642 12.49 -5.549
88 HO4 H HO4 N N N 0 -14.047 12.225 -9.223
89 HC31 H 1HC3 N N N 0 -6.307 4.981 -5.753
90 HC32 H 2HC3 N N N 0 -5.084 6.101 -6.401
91 HC41 H 1HC4 N N N 0 -4.082 4.449 -4.713
92 HC61 H 1HC6 N N N 0 -4.194 7.351 -3.683
93 HC62 H 2HC6 N N N 0 -3.048 6.751 -4.918
94 H141 H 1H14 N N N 0 -7.89 5.142 -2.659
95 H142 H 2H14 N N N 0 -7.038 4.278 -1.388
96 H151 H 1H15 N N N 0 -8.824 3.024 -3.539
97 H152 H 2H15 N N N 0 -7.93 2.086 -2.342
98 H161 H 1H16 N N N 0 -10.111 4.156 -1.737
99 H162 H 2H16 N N N 0 -9.198 3.277 -0.509
100 H171 H 1H17 N N N 0 -10.044 1.112 -1.387
101 H172 H 2H17 N N N 0 -10.95 1.957 -2.646
102 H181 H 1H18 N N N 0 -12.247 3.182 -0.877
103 H182 H 2H18 N N N 0 -11.351 2.318 0.366
104 H191 H 1H19 N N N 0 -12.226 0.125 -0.599
105 H192 H 2H19 N N N 0 -13.141 1.057 -1.775
106 H201 H 1H20 N N N 0 -13.526 1.216 1.248
107 H202 H 2H20 N N N 0 -14.376 2.203 0.07
108 H211 H 1H21 N N N 0 -14.598 -0.833 0.429
109 H212 H 2H21 N N N 0 -15.801 0.376 0.786
110 H221 H 1H22 N N N 0 -16.023 0.975 -1.655
111 H231 H 1H23 N N N 0 -15.288 -1.97 -1.677
112 H241 H 1H24 N N N 0 -16.645 -0.121 -3.747
113 H242 H 2H24 N N N 0 -17.147 -1.758 -3.405
114 H311 H 1H31 N N N 0 -0.506 5.428 -1.925
115 H312 H 2H31 N N N 0 -1.661 5.951 -0.708
116 H321 H 1H32 N N N 0 -0.489 8.169 -0.545
117 H341 H 1H34 N N N 0 2.606 7.989 -0.168
118 H322 H 2H32 N N N 0 0.641 7.658 -1.798
119 H331 H 1H33 N N N 0 1.472 5.82 -0.363
120 H332 H 2H33 N N N 0 0.339 6.242 0.907
121 H342 H 2H34 N N N 0 1.459 8.52 1.051
122 H351 H 1H35 N N N 0 2.234 6.709 2.572
123 H352 H 2H35 N N N 0 3.416 6.194 1.384
124 H361 H 1H36 N N N 0 4.485 8.513 1.526
125 H362 H 2H36 N N N 0 3.291 8.938 2.75
126 H371 H 1H37 N N N 0 5.427 8.316 3.812
127 H401 H 1H40 N N N 0 2.715 5.837 6.584
128 H372 H 2H37 N N N 0 5.415 6.77 2.979
129 H381 H 1H38 N N N 0 3.373 7.618 5.154
130 H391 H 1H39 N N N 0 4.694 4.976 4.355
131 H402 H 2H40 N N N 0 4.027 4.694 6.82
132 H411 H 1H41 N N N 0 2.955 3.127 5.222
133 H412 H 2H41 N N N 0 1.891 3.491 6.577
134 H421 H 1H42 N N N 0 0.661 5.15 5.147
135 H422 H 2H42 N N N 0 1.734 4.777 3.795
136 H431 H 1H43 N N N 0 -0.118 2.773 5.196
137 H432 H 2H43 N N N 0 0.992 2.376 3.898
138 H441 H 1H44 N N N 0 -1.34 4.321 3.657
139 H442 H 2H44 N N N 0 -0.171 3.991 2.39
140 H251 H 1H25 N N N 0 -14.945 -2.644 -4.189
141 H252 H 2H25 N N N 0 -15.766 -1.738 -5.445
142 H261 H 1H26 N N N 0 -13.531 -0.65 -3.691
143 H262 H 2H26 N N N 0 -13.34 -1.228 -5.337
144 H271 H 1H27 N N N 0 -14.984 1.214 -4.505
145 H272 H 2H27 N N N 0 -14.87 0.579 -6.136
146 H281 H 1H28 N N N 0 -12.376 0.953 -6.1
147 H282 H 2H28 N N N 0 -12.526 1.642 -4.483
148 H291 H 1H29 N N N 0 -13.88 2.704 -7.01
149 H292 H 2H29 N N N 0 -14.1 3.394 -5.406
150 H301 H 1H30 N N N 0 -11.481 3.22 -6.965
151 H302 H 2H30 N N N 0 -11.605 3.872 -5.334
152 H481 H 1H48 N N N 0 -13.071 5.713 -6.17
153 H482 H 2H48 N N N 0 -13.053 4.999 -7.795
154 H483 H 3H48 N N N 0 -11.565 5.649 -7.089
155 H451 H 1H45 N N N 0 -0.925 1.563 2.4
156 H452 H 2H45 N N N 0 -2.116 1.992 3.613
157 H461 H 1H46 N N N 0 -2.003 3.129 0.77
158 H462 H 2H46 N N N 0 -3.161 3.628 2.006
159 H471 H 1H47 N N N 0 -4.035 1.285 2.121
160 H472 H 2H47 N N N 0 -4.139 1.943 0.479
161 H473 H 3H47 N N N 0 -2.858 0.789 0.889