Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : GL4

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 29


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -0.071 -0.379 -0.411
2 C2 C C2 R N N 0 -1.441 -0.643 0.205
3 O2 O O2 N N N 0 -2.461 -0.158 -0.669
4 C3 C C3 S N N 0 -1.533 0.081 1.554
5 O3 O O3 N N N 0 -2.743 -0.29 2.217
6 C4 C C4 S N N 0 -0.327 -0.325 2.409
7 O4 O O4 N N N 0 -0.318 0.439 3.616
8 C5 C C5 R N N 0 0.956 -0.054 1.622
9 C6 C C6 N N N 0 2.167 -0.411 2.485
10 O6 O O6 N N N 0 3.367 -0.156 1.753
11 O5 O O5 N N N 0 0.97 -0.845 0.435
12 N2 N N2 N N N 0 0.02 -1.008 -1.736
13 C8 C C8 N N N 0 0.213 -0.01 -2.62
14 S8 S S8 N N N 0 0.38 -0.252 -4.306
15 N1 N N1 N N N 0 0.258 1.19 -2.032
16 C7 C C7 N N N 0 0.098 1.096 -0.695
17 O7 O O7 N N N 0 0.092 2.003 0.108
18 H2 H H2 N N N 0 -1.571 -1.714 0.358
19 HO2 H HO2 N N Y 0 -3.308 -0.345 -0.242
20 H3 H H3 N N N 0 -1.521 1.159 1.391
21 HO3 H HO3 N N Y 0 -2.759 0.186 3.057
22 H4 H H4 N N N 0 -0.392 -1.386 2.65
23 HO4 H HO4 N N Y 0 0.453 0.152 4.122
24 H5 H H5 N N N 0 1.001 1.001 1.354
25 H61 H H61 N N N 0 2.123 -1.467 2.754
26 H62 H H62 N N N 0 2.159 0.194 3.391
27 HO6 H HO6 N N Y 0 4.104 -0.394 2.331
28 HN2 H HN2 N N N 0 -0.045 -1.955 -1.934
29 HN1 H HN1 N N N 0 0.389 2.025 -2.507