Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GND

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 27


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CA C CA S N N 0 1.495 1.476 2.04
2 CB C CB N N N 0 2.375 0.247 2.292
3 CG C CG N N N 0 1.615 -0.927 2.923
4 CD C CD N N N 0 2.517 -2.129 3.197
5 NE N NE N N N 0 1.763 -3.21 3.785
6 CZ C CZ N N N 0 2.243 -4.445 4.168
7 NH1 N NH1 N N N 0 1.454 -5.347 4.69
8 NH2 N NH2 N N N 0 3.581 -4.681 3.974
9 C C C N N N 0 0.371 1.146 1.081
10 OXT O OXT N N Y 0 0.835 0.81 -0.151
11 O O O N N N 0 -0.82 1.171 1.36
12 N N N N N N 1 0.923 1.95 3.335
13 HA H HA N N N 0 2.067 2.322 1.645
14 HB1 H 1HB N N N 0 2.805 -0.087 1.339
15 HB2 H 2HB N N N 0 3.226 0.527 2.926
16 HG1 H 1HG N N N 0 1.139 -0.611 3.859
17 HG2 H 2HG N N N 0 0.815 -1.242 2.242
18 HD1 H 1HD N N N 0 2.954 -2.477 2.256
19 HD2 H 2HD N N N 0 3.343 -1.852 3.86
20 HE H HE N N N 0 0.772 -3.031 3.926
21 HH11 H 1HH1 N N N 0 0.506 -4.96 4.742
22 HH21 H 1HH2 N N N 0 4.201 -3.988 3.571
23 HH22 H 2HH2 N N N 0 3.998 -5.569 4.234
24 HXT H HXT N N Y 0 0.143 0.587 -0.81
25 HN1 H 1HN N N N 0 1.6 1.83 4.091
26 HN2 H 2HN N N Y 0 0.08 1.421 3.568
27 HN3 H 3HN N N N 0 0.677 2.941 3.276